SecReT6
I. Summary
SecReT6 ID583 insolico
StrainYersinia pestis A1122
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017168
Location2701212..2711525
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100010
ComponentTssGTssJTssKTssM
Number0001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A1122_123802696397..2696864 [-], 468384139426hypothetical protein 
2A1122_123852697480..2698022 [+], 543384139427hypothetical protein 
3A1122_123902698027..2700066 [+], 2040384139428hypothetical protein 
4A1122_123952700442..2700783 [+], 342384139429alkylphosphonate utilization operon protein PhnA 
5A1122_124002700840..2701187 [-], 348384139430membrane protein 
6A1122_124052701212..2701691 [-], 480384139431hypothetical protein  TssE
7A1122_124102701788..2702594 [-], 807384139432hypothetical protein  TagJ
8A1122_124152703462..2703722 [-], 261384139433hypothetical protein  PAAR
9A1122_124202703821..2706571 [-], 2751384139434hypothetical protein  TssI
10A1122_124252706624..2706725 [-], 102384139435hypothetical protein 
11A1122_124302706898..2710725 [-], 3828384139436type VI secretion protein IcmF  TssM
12A1122_124352710734..2711525 [-], 792384139437SciP protein  TssL
13A1122_124402711586..2712368 [-], 783384139438transposase/IS protein 
14A1122_124452712365..2713387 [-], 1023384139439transposase for insertion sequence 
15A1122_12450 (recO)2713514..2714239 [-], 726384139440DNA repair protein RecO 
16A1122_12455 (era)2714249..2715160 [-], 912384139441GTPase Era 
17A1122_12460 (rnc)2715157..2715771 [-], 615384139442ribonuclease III 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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