SecReT6
I. Summary
SecReT6 ID584 insolico
StrainYersinia pestis A1122
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017168
Location3969143..4002677
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A1122_184553965149..3965802 [-], 654384140626hypothetical protein 
2A1122_184603966030..3967625 [-], 1596384140627ABC transporter ATP-binding protein 
3A1122_184653968308..3968931 [+], 624384140628hypothetical protein 
4A1122_184703969143..3970510 [-], 1368384140629hypothetical protein  TssA
5A1122_184753970535..3970987 [-], 453384140630hypothetical protein  TssE
6A1122_184803970987..3971568 [-], 582384140631hypothetical protein  TssJ
7A1122_184853971543..3972628 [-], 1086384140632hypothetical protein  TssG
8A1122_184903972592..3974355 [-], 1764384140633type VI secretion protein  TssF
9A1122_184953974576..3975046 [-], 471384140634hypothetical protein 
10A1122_185003975046..3976104 [-], 1059384140635hypothetical protein  PAAR
11A1122_185053976122..3977723 [-], 1602384140636hypothetical protein  TssA
12A1122_185103977767..3981189 [-], 3423384140637hypothetical protein  TssM
13A1122_185153981186..3982418 [-], 1233384140638hypothetical protein 
14A1122_185203983139..3983258 [-], 120384140639hypothetical protein 
15A1122_185253983530..3983850 [+], 321384140640transposase 
16A1122_185303984364..3984531 [-], 168384140641hypothetical protein 
17A1122_185353984583..3985053 [-], 471384140642hypothetical protein 
18A1122_185403985130..3985231 [+], 102384140643hypothetical protein 
19A1122_185453985226..3987409 [-], 2184384140644hypothetical protein 
20A1122_185503987425..3987685 [-], 261384140645hypothetical protein 
21A1122_185553987839..3988612 [-], 774384140646hypothetical protein 
22A1122_185603988609..3990909 [-], 2301384140647hypothetical protein 
23A1122_185653990925..3993273 [-], 2349384140648hypothetical protein  TssI
24A1122_185703993276..3995918 [-], 2643384140649putative ATPase subunit of ATP-dependent protease  TssH
25A1122_185753996306..3996797 [-], 492384140650hypothetical protein  TssD
26A1122_185803996801..3998537 [-], 1737384140651hypothetical protein  TagL
27A1122_185853998537..3999223 [-], 687384140652hypothetical protein  TssL
28A1122_185903999220..4000572 [-], 1353384140653hypothetical protein  TssK
29A1122_185954000584..4002128 [-], 1545384140654hypothetical protein  TssC
30A1122_186004002177..4002677 [-], 501384140655hypothetical protein  TssB
31A1122_186054003666..4004514 [-], 849384140656putative acyl transferase 
32A1122_186104004613..4004861 [-], 249384140657putative acyl carrier protein 
33A1122_186154004899..4005387 [-], 489384140658hypothetical protein 
34A1122_186204005426..4006214 [-], 789384140659putative short chain dehydrogenase 
35A1122_186254006217..4006969 [-], 753384140660polyketide biosynthesis enoyl-CoA hydratase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A1122_185753996306..3996797 [-], 492384140650hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A