SecReT6
I. Summary
SecReT6 ID585 insolico
StrainAcinetobacter baumannii MDR-ZJ06
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017171
Location1508063..1527474
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABZJ_014491503943..1504824 [-], 882384142695nitrate/sulfonate/bicarbonate ABC transporter ATPase 
2ABZJ_014501504824..1505768 [-], 945384142696nitrate/sulfonate/bicarbonate ABC transporter permease 
3ABZJ_014511505726..1505842 [-], 117384142697hypothetical protein 
4ABZJ_014521505864..1506265 [-], 402384142698hypothetical protein 
5ABZJ_014531507354..1508046 [+], 693384142699hypothetical protein 
6ABZJ_014541508063..1508566 [+], 504384142700hypothetical protein  TssB
7ABZJ_014551508544..1510040 [+], 1497384142701hypothetical protein  TssC
8ABZJ_014561510090..1510593 [+], 504384142702hypothetical protein  TssD
9ABZJ_014571510673..1511149 [+], 477384142703hypothetical protein  TssE
10ABZJ_014581511166..1512977 [+], 1812384142704hypothetical protein  TssF
11ABZJ_014591512941..1513939 [+], 999384142705hypothetical protein  TssG
12ABZJ_014601513936..1515348 [+], 1413384142706hypothetical protein 
13ABZJ_014611515379..1519203 [+], 3825384142707hypothetical protein  TssM
14ABZJ_014621519205..1520200 [+], 996384142708hypothetical protein 
15ABZJ_014631520203..1520970 [+], 768384142709putative outer membrane lipoprotein  TagL
16ABZJ_014641520987..1521250 [+], 264384142710hypothetical protein  PAAR
17ABZJ_014651521470..1524151 [+], 2682384142711chaperone ATPase  TssH
18ABZJ_014661524175..1525269 [+], 1095384142712hypothetical protein  TssA
19ABZJ_014671525286..1526650 [+], 1365384142713hypothetical protein  TssK
20ABZJ_014681526668..1527474 [+], 807384142714hypothetical protein  TssL
21ABZJ_014691527487..1528089 [+], 603384142715hypothetical protein 
22ABZJ_014701528097..1529050 [+], 954384142716hypothetical protein 
23ABZJ_014711529053..1529904 [-], 852384142717transcriptional regulator 
24ABZJ_014721530014..1530724 [+], 711384142718ankyrin repeat-containing protein 
25ABZJ_014731530740..1531222 [+], 483384142719guanine deaminase 
26ABZJ_014741531222..1532400 [+], 1179384142720cyanate permease 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ABZJ_014561510090..1510593 [+], 504384142702hypothetical protein A1S_1296

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Proteins        Genes
N/A
N/A