SecReT6
I. Summary
SecReT6 ID587 insolico
StrainBradyrhizobium japonicum USDA 6
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017249
Location3431123..3452254
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BJ6T_335303426521..3427519 [-], 999384217049hypothetical protein 
2BJ6T_335403427735..3428613 [-], 879384217050hypothetical protein 
3BJ6T_335503428815..3429444 [+], 630384217051hypothetical protein 
4BJ6T_335603429531..3431117 [-], 1587384217052hypothetical protein 
5BJ6T_335703431123..3433762 [-], 2640384217053ATP-dependent Clp protease, ATP-binding subunit  TssH
6BJ6T_335803433860..3434891 [-], 1032384217054hypothetical protein  TssG
7BJ6T_335903434888..3436855 [-], 1968384217055hypothetical protein  TssF
8BJ6T_336003436857..3437405 [-], 549384217056hypothetical protein  TssE
9BJ6T_336103437586..3438071 [-], 486384217057hypothetical protein  TssD
10BJ6T_336203438120..3439622 [-], 1503384217058hypothetical protein  TssC
11BJ6T_336303439639..3440115 [-], 477384217059hypothetical protein  TssB
12BJ6T_336403440294..3441682 [-], 1389384217060hypothetical protein  TssA
13BJ6T_336503441957..3443825 [+], 1869384217061hypothetical protein  TssI
14BJ6T_336603443831..3444394 [+], 564384217062hypothetical protein 
15BJ6T_336703444407..3445765 [+], 1359384217063hypothetical protein  Fha
16BJ6T_336803445814..3447151 [+], 1338384217064hypothetical protein  TssK
17BJ6T_336903447148..3448674 [+], 1527384217065hypothetical protein  TssL
18BJ6T_337003448718..3452254 [+], 3537384217066hypothetical protein  TssM
19BJ6T_337103452257..3452952 [+], 696384217067hypothetical protein 
20BJ6T_337203452959..3453735 [+], 777384217068hypothetical protein 
21BJ6T_337303453732..3455540 [+], 1809384217069hypothetical protein 
22BJ6T_337403455550..3456533 [-], 984384217070hypothetical protein 
23BJ6T_337503456632..3456922 [-], 291384217071hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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