SecReT6
I. Summary
SecReT6 ID590 insolico
StrainYersinia pestis biovar Medievalis str. Harbin 35
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017265
Location1414132..1450786
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPC_1440 (mltB)1410333..1411427 [+], 1095384413988membrane-bound lytic murein transglycosylase B 
2YPC_14411411636..1411776 [+], 141384413989hypothetical protein 
3YPC_14421412693..1413295 [+], 603384413990putative luxR-family regulatory protein 
4YPC_14431413653..1414135 [-], 483384413991hypothetical protein 
5YPC_14441414132..1415814 [-], 1683384413992putative OMPA family outer membrane porinprecursor  TagL
6YPC_14451415815..1416516 [-], 702384413993hypothetical protein 
7YPC_14461416513..1417850 [-], 1338384413994hypothetical protein 
8YPC_14471417890..1418921 [-], 1032384413995putative fimbrial protein 
9YPC_14481418928..1420109 [-], 1182384413996hypothetical protein  TssA
10YPC_14491420208..1421233 [-], 1026384413997hypothetical protein  TssG
11YPC_14501421233..1423113 [-], 1881384413998hypothetical protein  TssF
12YPC_14511423251..1423349 [-], 99384413999hypothetical protein 
13YPC_14521423821..1426571 [+], 2751384414000ClpB protein  TssH
14YPC_14531426772..1427317 [+], 546384414001frimbrial protein 
15YPC_14541427474..1428235 [+], 762384414002putative pili chaperone protein 
16YPC_14551428363..1429913 [+], 1551384414003putative outer membrane fimbrial usher porinprecursor 
17YPC_14561429935..1431143 [-], 1209384414004putative transposase 
18YPC_14571431168..1432358 [+], 1191384414005putative outer membrane fimbrial usher porinprecursor 
19YPC_14581432343..1432951 [+], 609384414006fimbrial protein 
20YPC_14591433056..1433580 [+], 525384414007hypothetical protein  TssB
21YPC_14601433604..1435106 [+], 1503384414008hypothetical protein  TssC
22YPC_14611435432..1435917 [+], 486384414009hypothetical protein  TssD
23YPC_14621436170..1436730 [+], 561384414010putative exported protein precursor  TssJ
24YPC_14631436734..1438083 [+], 1350384414011hypothetical protein  TssK
25YPC_14641438116..1438748 [+], 633384414012Flagellar motor rotation protein motB  TssL
26YPC_14651438762..1439784 [+], 1023384414013transposase 
27YPC_14661439781..1440563 [+], 783384414014transposase 
28YPC_14671440579..1441415 [+], 837384414015putative OmpA family protein  TssL
29YPC_14681441402..1441542 [+], 141384414016hypothetical protein 
30YPC_14691441424..1443829 [+], 2406384414017hypothetical protein  TssM
31YPC_14701443835..1445250 [+], 1416384414018hypothetical protein  TssM
32YPC_14711445544..1448129 [+], 2586384414019hypothetical protein  TssI
33YPC_14721448228..1448488 [+], 261384414020hypothetical protein  PAAR
34YPC_14731448488..1449336 [+], 849384414021hypothetical protein 
35YPC_14741449356..1450162 [+], 807384414022Protein of avirulence locus ImpE  TagJ
36YPC_14751450307..1450786 [+], 480384414023hypothetical protein  TssE
37YPC_14761450811..1451158 [+], 348384414024hypothetical protein 
38YPC_14771451233..1451574 [-], 342384414025hypothetical protein 
39YPC_14781451913..1452020 [-], 108384414026hypothetical protein 
40YPC_14791451950..1453989 [-], 2040384414027hypothetical protein 
41YPC_1480 (lemA)1453994..1454536 [-], 543384414028hypothetical protein 
42YPC_14821455106..1455225 [+], 120384414029hypothetical protein 
43YPC_14831455152..1455619 [+], 468384414030hypothetical protein 
44YPC_14841455639..1455734 [-], 96384414031hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPC_14611435432..1435917 [+], 486384414009hypothetical protein ROD_27741

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Proteins        Genes
N/A
N/A