SecReT6
I. Summary
SecReT6 ID591 insolico
StrainYersinia pestis biovar Medievalis str. Harbin 35
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017265
Location2578105..2611633
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPC_26622574111..2574764 [-], 654384415134hypothetical protein 
2YPC_2663 (ybiT)2574992..2576587 [-], 1596384415135ABC transporter ATP-binding protein 
3YPC_26642577270..2577893 [+], 624384415136hypothetical protein 
4YPC_26652578105..2579472 [-], 1368384415137hypothetical protein  TssA
5YPC_26662579497..2579949 [-], 453384415138hypothetical protein  TssE
6YPC_26672579949..2580530 [-], 582384415139putative lipoprotein  TssJ
7YPC_26682580505..2581590 [-], 1086384415140hypothetical protein  TssG
8YPC_26692581554..2583317 [-], 1764384415141hypothetical protein  TssF
9YPC_26702583538..2584008 [-], 471384415142hypothetical protein 
10YPC_26712584008..2585066 [-], 1059384415143hypothetical protein  PAAR
11YPC_26722585084..2586685 [-], 1602384415144hypothetical protein  TssA
12YPC_26732586729..2590151 [-], 3423384415145hypothetical protein  TssM
13YPC_26742590148..2591380 [-], 1233384415146hypothetical protein 
14YPC_26752592210..2592383 [+], 174384415147transposase 
15YPC_26762592492..2592812 [+], 321384415148transposase 
16YPC_26772592943..2593080 [+], 138384415149transposase 
17YPC_26782593326..2593493 [-], 168384415150hypothetical protein 
18YPC_26792593545..2594015 [-], 471384415151hypothetical protein 
19YPC_26802594092..2594193 [+], 102384415152hypothetical protein 
20YPC_26812594188..2596371 [-], 2184384415153hypothetical protein 
21YPC_26822596387..2596647 [-], 261384415154ABC-type multidrug/protein/lipid transportsystem, ATPase component 
22YPC_26832596801..2597574 [-], 774384415155hypothetical protein 
23YPC_26842597571..2599871 [-], 2301384415156putative kinase 
24YPC_26852599887..2602235 [-], 2349384415157hypothetical protein  TssI
25YPC_26862602238..2604880 [-], 2643384415158ClpB protein  TssH
26YPC_26872605268..2605759 [-], 492384415159hypothetical protein  TssD
27YPC_26882605763..2607499 [-], 1737384415160hypothetical protein  TagL
28YPC_26892607499..2608185 [-], 687384415161hypothetical protein  TssL
29YPC_26902608182..2609534 [-], 1353384415162hypothetical protein  TssK
30YPC_26912609546..2611084 [-], 1539384415163hypothetical protein  TssC
31YPC_26922611133..2611633 [-], 501384415164hypothetical protein  TssB
32YPC_26932612622..2613470 [-], 849384415165putative acyl transferase 
33YPC_26942613569..2613817 [-], 249384415166putative acyl carrier protein 
34YPC_26952613855..2614295 [-], 441384415167hypothetical protein 
35YPC_26962614288..2614407 [-], 120384415168hypothetical protein 
36YPC_26972614382..2615170 [-], 789384415169putative short chain dehydrogenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPC_26872605268..2605759 [-], 492384415159hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A