SecReT6
I. Summary
SecReT6 ID592 insolico
StrainYersinia pestis biovar Medievalis str. Harbin 35
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017265
Location3870184..3893796
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number110111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPC_4008 (djlA)3866137..3866970 [+], 834384416363DnaJ-like membrane chaperone protein 
2YPC_4009 (rluA)3867268..3867888 [-], 621384416364Ribosomal large subunit pseudouridine synthase A 
3YPC_40103869111..3869854 [-], 744384416365hypothetical protein 
4YPC_40113870184..3871197 [+], 1014384416366hypothetical protein  TssA
5YPC_40123871208..3871768 [+], 561384416367hypothetical protein  TssB
6YPC_40133871768..3873279 [+], 1512384416368hypothetical protein  TssC
7YPC_40143873442..3873960 [+], 519384416369hypothetical protein  TssD
8YPC_40153874034..3874477 [+], 444384416370hypothetical protein  TssE
9YPC_40163874510..3876354 [+], 1845384416371hypothetical protein  TssF
10YPC_40173876347..3877330 [+], 984384416372hypothetical protein  TssG
11YPC_40183877333..3879936 [+], 2604384416373ClpB protein  TssH
12YPC_40193880040..3882388 [+], 2349384416374hypothetical protein  TssI
13YPC_40203882401..3884620 [+], 2220384416375hypothetical protein 
14YPC_40213884646..3885749 [+], 1104384416376hypothetical protein 
15YPC_40223885742..3886359 [+], 618384416377hypothetical protein 
16YPC_40233886365..3886730 [+], 366384416378hypothetical protein  PAAR
17YPC_40243886723..3887214 [+], 492384416379putative lipoprotein  TssJ
18YPC_40253887334..3888689 [+], 1356384416380hypothetical protein  TssK
19YPC_40283890344..3893796 [+], 3453384416381hypothetical protein  TssM
20YPC_40293893818..3894171 [+], 354384416382hypothetical protein 
21YPC_40303894250..3894465 [+], 216384416383hypothetical protein 
22YPC_4031 (hepA)3894427..3897333 [-], 2907384416384ATP-dependent helicase HepA 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563 , YPK_3558

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPC_40143873442..3873960 [+], 519384416369hypothetical protein YPK_3563
2YPC_40193880040..3882388 [+], 2349384416374hypothetical protein YPK_3558

Download FASTA format files
Proteins        Genes
N/A
N/A