SecReT6
I. Summary
SecReT6 ID593 insolico
StrainYersinia pestis biovar Medievalis str. Harbin 35
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017265
Location4265659..4293264
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101220001
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPC_44034265234..4265656 [-], 423384416724hypothetical protein 
2YPC_44044265659..4267857 [-], 2199384416725putative Rhs accessory genetic element  TssI
3YPC_44054267879..4268055 [-], 177384416726hypothetical protein 
4YPC_44064268218..4268625 [+], 408384416727transcriptional regulator 
5YPC_44074268707..4268931 [+], 225384416728hypothetical protein 
6YPC_44084269007..4269198 [+], 192384416729hypothetical protein 
7YPC_44094269248..4269733 [-], 486384416730hypothetical protein 
8YPC_44104269735..4270043 [-], 309384416731Rhs-family protein 
9YPC_44114270108..4271106 [-], 999384416732Rhs-family protein 
10YPC_44144273992..4274450 [-], 459384416733hypothetical protein 
11YPC_44154274456..4276858 [-], 2403384416734putative Rhs accessory genetic element  TssI
12YPC_44164276880..4277413 [-], 534384416735hypothetical protein 
13YPC_44174277410..4278192 [-], 783384416736hypothetical protein  TssA
14YPC_44184278317..4281850 [-], 3534384416737hypothetical protein  TssM
15YPC_44194281882..4283270 [-], 1389384416738hypothetical protein  TssA
16YPC_44204283276..4283962 [-], 687384416739hypothetical protein 
17YPC_44214283959..4284756 [-], 798384416740hypothetical protein 
18YPC_44224284753..4287356 [-], 2604384416741ClpB protein  TssH
19YPC_44234287367..4288134 [-], 768384416742hypothetical protein  TssL
20YPC_44244288134..4289480 [-], 1347384416743hypothetical protein  TssK
21YPC_44254289483..4290028 [-], 546384416744putative lipoprotein  TssJ
22YPC_44264290028..4290153 [-], 126384416745hypothetical protein  Fha
23YPC_44274290042..4291343 [-], 1302384416746hypothetical protein  Fha
24YPC_44284291469..4292566 [-], 1098384416747hypothetical protein  TssG
25YPC_44294292521..4293264 [-], 744384416748hypothetical protein  TssF
26YPC_44304293153..4293830 [+], 678384416749insertion element IS1661 DNA-binding protein 
27YPC_44314293884..4294669 [+], 786384416750transposase for insertion sequence IS1661 
28YPC_44324295024..4295455 [-], 432384416751hypothetical protein 
29YPC_44334295458..4295922 [-], 465384416752hypothetical protein 
30YPC_44344296231..4296605 [-], 375384416753hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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