SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	594
Strain	Xanthomonas oryzae pv. oryzicola BLS256
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017267
Location	1282242..1365383
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	3	8	0	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	3	1

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III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	XOC_1305	1278514..1279167 [-], 654	384418298	hypothetical protein
2	XOC_1306	1279436..1280314 [+], 879	384418299	D-alanyl-D-alanine carboxypeptidase
3	XOC_1307	1280425..1280685 [+], 261	384418300	hypothetical protein	PAAR
4	XOC_1308	1280745..1282226 [+], 1482	384418301	hypothetical protein
5	XOC_1309	1282242..1285979 [+], 3738	384418302	ImcF-related family	TssM
6	XOC_1310	1285976..1286959 [+], 984	384418303	hypothetical protein
7	XOC_1311	1287070..1287750 [+], 681	384418304	OmpA family domain-containing protein	TagL
8	XOC_1313	1289216..1289512 [-], 297	384418305	hypothetical protein
9	XOC_1314	1289550..1289684 [-], 135	384418306	hypothetical protein
10	XOC_1315	1289818..1292643 [+], 2826	384418307	Rhs element Vgr protein	TssI
11	XOC_1316	1292640..1293464 [+], 825	384418308	hypothetical protein
12	XOC_1317	1293457..1294071 [+], 615	384418309	hypothetical protein
13	XOC_1318	1294110..1295039 [+], 930	384418310	hypothetical protein
14	XOC_1319	1295078..1295629 [+], 552	384418311	lipoprotein
15	XOC_1320	1295668..1296597 [+], 930	384418312	hypothetical protein
16	XOC_1321	1296636..1297187 [+], 552	384418313	lipoprotein
17	XOC_1322	1297226..1299418 [+], 2193	384418314	hypothetical protein
18	XOC_1323	1299399..1299791 [+], 393	384418315	VGR-related protein
19	XOC_1324	1299846..1300706 [+], 861	384418316	hypothetical protein
20	XOC_1325	1301343..1302755 [+], 1413	384418317	hypothetical protein
21	XOC_1326	1302900..1305188 [+], 2289	384418318	Rhs element Vgr protein	TssI
22	XOC_1327	1305230..1307545 [-], 2316	384418319	Rhs element Vgr protein	TssI
23	XOC_1328	1307556..1308347 [-], 792	384418320	hypothetical protein	TssL
24	XOC_1329	1308344..1309234 [-], 891	384418321	hypothetical protein	TssK
25	XOC_1330	1309329..1310408 [-], 1080	384418322	hypothetical protein
26	XOC_1331	1310405..1311844 [-], 1440	384418323	hypothetical protein
27	XOC_1332	1311853..1312392 [-], 540	384418324	hypothetical protein
28	XOC_1333	1312419..1313615 [-], 1197	384418325	ISxac1 transposase
29	XOC_1334	1313643..1315103 [-], 1461	384418326	IS1114 transposase, IS5 family
30	XOC_1335	1315379..1316347 [-], 969	384418327	ISXo1 transposase, IS5 family
31	XOC_1336	1317270..1320206 [-], 2937	384418328	EF hand domain-containing protein
32	XOC_1337	1320231..1322768 [-], 2538	384418329	hypothetical protein	TssI
33	XOC_1338	1322779..1323570 [-], 792	384418330	hypothetical protein	TssL
34	XOC_1339	1323567..1324457 [-], 891	384418331	hypothetical protein	TssK
35	XOC_1340	1324552..1325631 [-], 1080	384418332	hypothetical protein
36	XOC_1341	1325628..1327115 [-], 1488	384418333	hypothetical protein
37	XOC_1342	1327175..1328854 [-], 1680	384418334	Rhs element Vgr protein	TssI
38	XOC_1343	1328937..1330283 [-], 1347	384418335	IS1114 transposase, IS5 family
39	XOC_1344	1330284..1330397 [-], 114	384418336	IS1114 transposase, IS5 family
40	XOC_1345	1330419..1331261 [-], 843	384418337	IS1403 transposase, IS3 family
41	XOC_1346	1331255..1331518 [-], 264	384418338	IS1403 transposase, IS3 family
42	XOC_1347	1332334..1335375 [-], 3042	384418339	EF hand domain-containing protein
43	XOC_1348	1335400..1337937 [-], 2538	384418340	Rhs element Vgr protein	TssI
44	XOC_1349	1337948..1338739 [-], 792	384418341	hypothetical protein	TssL
45	XOC_1350	1338736..1340070 [-], 1335	384418342	hypothetical protein	TssK
46	XOC_1351	1340222..1340830 [-], 609	384418343	lipoprotein	TssJ
47	XOC_1352	1341090..1341704 [+], 615	384418344	TPR repeat protein
48	XOC_1353	1341751..1342251 [+], 501	384418345	EvpA protein	TssB
49	XOC_1354	1342255..1343751 [+], 1497	384418346	EvpB protein	TssC
50	XOC_1355	1343893..1344390 [+], 498	384418347	hypothetical protein	TssD
51	XOC_1356	1344394..1344528 [+], 135	384418348	hypothetical protein
52	XOC_1357	1344538..1345026 [+], 489	384418349	hypothetical protein	TssE
53	XOC_1358	1345029..1346864 [+], 1836	384418350	EvpF protein	TssF
54	XOC_1359	1346828..1347919 [+], 1092	384418351	hypothetical protein	TssG
55	XOC_1360	1348005..1350737 [+], 2733	384418352	protease associated ATPase ClpB	TssH
56	XOC_1361	1350768..1351121 [+], 354	384418353	hypothetical protein
57	XOC_1362	1351214..1353973 [+], 2760	384418354	Rhs element Vgr protein	TssI
58	XOC_1364	1354244..1354969 [+], 726	384418355	hypothetical protein
59	XOC_1363	1354960..1355538 [-], 579	384418356	hypothetical protein
60	XOC_1365	1354981..1357965 [+], 2985	384418357	hypothetical protein
61	XOC_1368	1361894..1362673 [+], 780	384418358	IS1114 transposase, IS5 family
62	XOC_1369	1362737..1363354 [+], 618	384418359	IS1114 transposase, IS5 family
63	XOC_1370	1363386..1365383 [+], 1998	384418360	Rhs element Vgr protein	TssI
64	XOC_1371	1365396..1366343 [+], 948	384418361	hypothetical protein
65	XOC_1372	1366336..1369632 [+], 3297	384418362	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A