SecReT6
I. Summary
SecReT6 ID594 insolico
StrainXanthomonas oryzae pv. oryzicola BLS256
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017267
Location1282242..1365383
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number113801111
ComponentTssGTssJTssKTssM
Number1131
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XOC_13051278514..1279167 [-], 654384418298hypothetical protein 
2XOC_13061279436..1280314 [+], 879384418299D-alanyl-D-alanine carboxypeptidase 
3XOC_13071280425..1280685 [+], 261384418300hypothetical protein  PAAR
4XOC_13081280745..1282226 [+], 1482384418301hypothetical protein 
5XOC_13091282242..1285979 [+], 3738384418302ImcF-related family  TssM
6XOC_13101285976..1286959 [+], 984384418303hypothetical protein 
7XOC_13111287070..1287750 [+], 681384418304OmpA family domain-containing protein  TagL
8XOC_13131289216..1289512 [-], 297384418305hypothetical protein 
9XOC_13141289550..1289684 [-], 135384418306hypothetical protein 
10XOC_13151289818..1292643 [+], 2826384418307Rhs element Vgr protein  TssI
11XOC_13161292640..1293464 [+], 825384418308hypothetical protein 
12XOC_13171293457..1294071 [+], 615384418309hypothetical protein 
13XOC_13181294110..1295039 [+], 930384418310hypothetical protein 
14XOC_13191295078..1295629 [+], 552384418311lipoprotein 
15XOC_13201295668..1296597 [+], 930384418312hypothetical protein 
16XOC_13211296636..1297187 [+], 552384418313lipoprotein 
17XOC_13221297226..1299418 [+], 2193384418314hypothetical protein 
18XOC_13231299399..1299791 [+], 393384418315VGR-related protein 
19XOC_13241299846..1300706 [+], 861384418316hypothetical protein 
20XOC_13251301343..1302755 [+], 1413384418317hypothetical protein 
21XOC_13261302900..1305188 [+], 2289384418318Rhs element Vgr protein  TssI
22XOC_13271305230..1307545 [-], 2316384418319Rhs element Vgr protein  TssI
23XOC_13281307556..1308347 [-], 792384418320hypothetical protein  TssL
24XOC_13291308344..1309234 [-], 891384418321hypothetical protein  TssK
25XOC_13301309329..1310408 [-], 1080384418322hypothetical protein 
26XOC_13311310405..1311844 [-], 1440384418323hypothetical protein 
27XOC_13321311853..1312392 [-], 540384418324hypothetical protein 
28XOC_13331312419..1313615 [-], 1197384418325ISxac1 transposase 
29XOC_13341313643..1315103 [-], 1461384418326IS1114 transposase, IS5 family 
30XOC_13351315379..1316347 [-], 969384418327ISXo1 transposase, IS5 family 
31XOC_13361317270..1320206 [-], 2937384418328EF hand domain-containing protein 
32XOC_13371320231..1322768 [-], 2538384418329hypothetical protein  TssI
33XOC_13381322779..1323570 [-], 792384418330hypothetical protein  TssL
34XOC_13391323567..1324457 [-], 891384418331hypothetical protein  TssK
35XOC_13401324552..1325631 [-], 1080384418332hypothetical protein 
36XOC_13411325628..1327115 [-], 1488384418333hypothetical protein 
37XOC_13421327175..1328854 [-], 1680384418334Rhs element Vgr protein  TssI
38XOC_13431328937..1330283 [-], 1347384418335IS1114 transposase, IS5 family 
39XOC_13441330284..1330397 [-], 114384418336IS1114 transposase, IS5 family 
40XOC_13451330419..1331261 [-], 843384418337IS1403 transposase, IS3 family 
41XOC_13461331255..1331518 [-], 264384418338IS1403 transposase, IS3 family 
42XOC_13471332334..1335375 [-], 3042384418339EF hand domain-containing protein 
43XOC_13481335400..1337937 [-], 2538384418340Rhs element Vgr protein  TssI
44XOC_13491337948..1338739 [-], 792384418341hypothetical protein  TssL
45XOC_13501338736..1340070 [-], 1335384418342hypothetical protein  TssK
46XOC_13511340222..1340830 [-], 609384418343lipoprotein  TssJ
47XOC_13521341090..1341704 [+], 615384418344TPR repeat protein 
48XOC_13531341751..1342251 [+], 501384418345EvpA protein  TssB
49XOC_13541342255..1343751 [+], 1497384418346EvpB protein  TssC
50XOC_13551343893..1344390 [+], 498384418347hypothetical protein  TssD
51XOC_13561344394..1344528 [+], 135384418348hypothetical protein 
52XOC_13571344538..1345026 [+], 489384418349hypothetical protein  TssE
53XOC_13581345029..1346864 [+], 1836384418350EvpF protein  TssF
54XOC_13591346828..1347919 [+], 1092384418351hypothetical protein  TssG
55XOC_13601348005..1350737 [+], 2733384418352protease associated ATPase ClpB  TssH
56XOC_13611350768..1351121 [+], 354384418353hypothetical protein 
57XOC_13621351214..1353973 [+], 2760384418354Rhs element Vgr protein  TssI
58XOC_13641354244..1354969 [+], 726384418355hypothetical protein 
59XOC_13631354960..1355538 [-], 579384418356hypothetical protein 
60XOC_13651354981..1357965 [+], 2985384418357hypothetical protein 
61XOC_13681361894..1362673 [+], 780384418358IS1114 transposase, IS5 family 
62XOC_13691362737..1363354 [+], 618384418359IS1114 transposase, IS5 family 
63XOC_13701363386..1365383 [+], 1998384418360Rhs element Vgr protein  TssI
64XOC_13711365396..1366343 [+], 948384418361hypothetical protein 
65XOC_13721366336..1369632 [+], 3297384418362hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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