SecReT6
I. Summary
SecReT6 ID595 insolico
StrainXanthomonas oryzae pv. oryzicola BLS256
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017267
Location2567491..2593866
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111201111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XOC_25242562905..2563231 [-], 327384419450hypothetical protein 
2XOC_25252563228..2566131 [-], 2904384419451protein kinase 
3XOC_25262566128..2566850 [-], 723384419452phosphoprotein phosphatase 
4XOC_25272566847..2567485 [-], 639384419453hypothetical protein 
5XOC_25282567491..2570949 [-], 3459384419454ImcF-related family  TssM
6XOC_25292570953..2572269 [-], 1317384419455OmpA family membrane protein  TssL
7XOC_25302572271..2573608 [-], 1338384419456protein ImpJ  TssK
8XOC_25312573605..2575002 [-], 1398384419457FHA domain-containing protein  Fha
9XOC_25322575008..2575547 [-], 540384419458hypothetical protein 
10XOC_25332575556..2577634 [-], 2079384419459Rhs-family protein  TssI
11XOC_25342577757..2578035 [-], 279384419460hypothetical protein 
12XOC_25352578289..2578546 [-], 258384419461transposase 
13XOC_25362579277..2580293 [-], 1017384419462transposase 
14XOC_25372580934..2583639 [-], 2706384419463chaperone ClpB  TssH
15XOC_25382583672..2584682 [-], 1011384419464hypothetical protein  TssG
16XOC_25392584646..2586523 [-], 1878384419465SciC protein  TssF
17XOC_25402586527..2587030 [-], 504384419466hypothetical protein  TssE
18XOC_25412587018..2587851 [-], 834384419467ImpE protein  TagJ
19XOC_25422587887..2588390 [-], 504384419468hypothetical protein  TssD
20XOC_25432588490..2589992 [-], 1503384419469SciI protein  TssC
21XOC_25442589997..2590632 [-], 636384419470hypothetical protein  TssB
22XOC_25452591104..2593866 [+], 2763384419471Rhs element Vgr protein  TssI
23XOC_25462593868..2594713 [+], 846384419472hypothetical protein 
24XOC_25472594753..2597599 [+], 2847384419473hypothetical protein 
25XOC_25482597705..2598631 [+], 927384419474hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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