SecReT6
I. Summary
SecReT6 ID597 insolico
StrainEdwardsiella tarda FL6-60
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017309
Location2506140..2526090
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ETAF_21932501471..2501752 [-], 282387868321hypothetical protein 
2ETAF_21942501791..2502339 [-], 549387868322Putative transporting ATPase 
3ETAF_2195 (yfcA)2502440..2503240 [-], 801387868323Putative membrane protein YfcA 
4ETAF_21962503544..2504773 [-], 1230387868324hypothetical protein 
5ETAF_21972505147..2505278 [-], 132387868325hypothetical protein 
6ETAF_2198 (evpP)2505588..2505890 [+], 303387868326type VI secretion system protein EvpP  EvpP (e)
7ETAF_2199 (evpA)2506140..2506655 [+], 516387868327type VI secretion system protein EvpA  TssB
8ETAF_2200 (evpB)2506652..2508139 [+], 1488387868328type VI secretion system protein EvpB  TssC
9ETAF_2201 (evpC)2508209..2508700 [+], 492387868329type VI secretion system protein EvpC  TssD
10ETAF_2202 (evpD)2508800..2510002 [+], 1203387868330type VI secretion system protein EvpD 
11ETAF_2203 (evpE)2510011..2510487 [+], 477387868331type VI secretion system protein EvpE  TssE
12ETAF_2204 (evpF)2510491..2512332 [+], 1842387868332type VI secretion system protein EvpF  TssF
13ETAF_2205 (evpG)2512329..2513354 [+], 1026387868333type VI secretion system protein EvpG  TssG
14ETAF_2206 (evpH)2513473..2516085 [+], 2613387868334type VI secretion system protein EvpH  TssH
15ETAF_2207 (evpI)2516085..2518070 [+], 1986387868335type VI secretion system protein EvpI  TssI
16ETAF_2208 (evpJ)2518165..2518467 [+], 303387868336type VI secretion system protein EvpJ  PAAR
17ETAF_2209 (evpK)2518481..2519548 [+], 1068387868337type VI secretion system protein EvpK  TssA
18ETAF_2210 (evpL)2519496..2520176 [+], 681387868338type VI secretion system protein EvpL  TssJ
19ETAF_2211 (evpM)2520276..2521664 [+], 1389387868339type VI secretion system protein EvpM  TssK
20ETAF_2212 (evpN)2521661..2522311 [+], 651387868340type VI secretion system protein EvpN  TssL
21ETAF_2213 (evpO)2522299..2526090 [+], 3792387868341type VI secretion system protein EvpO  TssM
22ETAF_22142526222..2527052 [-], 831387868342Murein endopeptidase 
23ETAF_2215 (aroG)2527066..2528151 [-], 1086387868343Chorismate synthase AroG 
24ETAF_22162528243..2529175 [-], 933387868344Ribosomal protein L3 methyltransferase 
25ETAF_22172529350..2529931 [+], 582387868345hypothetical protein 
26ETAF_2218 (sixA)2529982..2530458 [-], 477387868346phosphohistidine phosphatase SixA 
27ETAF_22192530850..2531074 [-], 225387868347hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EvpP , EvpC, EvpI

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ETAF_2198(evpP)2505588..2505890 [+], 303387868326type VI secretion system protein EvpP EvpP
2ETAF_2201(evpC)2508209..2508700 [+], 492387868329type VI secretion system protein EvpC EvpC
3ETAF_2207(evpI)2516085..2518070 [+], 1986387868335type VI secretion system protein EvpI EvpI

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Proteins        Genes
N/A
N/A