SecReT6
I. Summary
SecReT6 ID599 insolico
StrainAcinetobacter baumannii TCDC-AB0715
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017387
Location1580403..1599814
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABTW07_14641576283..1577164 [-], 882385237015ABC transporter ATP-binding protein 
2ABTW07_14651577164..1578108 [-], 945385237016nitrate/sulfonate/bicarbonate ABC transporter permease 
3ABTW07_14661578204..1578605 [-], 402385237017hypothetical protein 
4ABTW07_14671579694..1580386 [+], 693385237018hypothetical protein 
5ABTW07_14681580403..1580906 [+], 504385237019hypothetical protein  TssB
6ABTW07_14691580899..1582380 [+], 1482385237020hypothetical protein  TssC
7ABTW07_14701582430..1582933 [+], 504385237021hemolysin-coregulated protein  TssD
8ABTW07_14711583013..1583489 [+], 477385237022hypothetical protein  TssE
9ABTW07_1472 (vasA)1583506..1585317 [+], 1812385237023hypothetical protein  TssF
10ABTW07_14731585281..1586279 [+], 999385237024hypothetical protein  TssG
11ABTW07_14741586276..1587688 [+], 1413385237025hypothetical protein 
12ABTW07_1475 (icmF)1587719..1591543 [+], 3825385237026hypothetical protein  TssM
13ABTW07_14761591545..1592540 [+], 996385237027hypothetical protein 
14ABTW07_14771592543..1593310 [+], 768385237028outer membrane protein  TagL
15ABTW07_14781593327..1593590 [+], 264385237029hypothetical protein  PAAR
16ABTW07_1479 (clpV)1593810..1596491 [+], 2682385237030chaperone ATPase  TssH
17ABTW07_14801596515..1597609 [+], 1095385237031hypothetical protein  TssA
18ABTW07_14811597626..1598990 [+], 1365385237032hypothetical protein  TssK
19ABTW07_14821599008..1599814 [+], 807385237033hypothetical protein  TssL
20ABTW07_14831599827..1600429 [+], 603385237034hypothetical protein 
21ABTW07_14841600440..1601390 [+], 951385237035D-alanyl-D-alanine carboxypeptidase 
22ABTW07_14851601393..1602244 [-], 852385237036transcriptional regulator 
23ABTW07_14861602435..1603064 [+], 630385237037ankyrin repeat-containing protein 
24ABTW07_14871603080..1603562 [+], 483385237038CMP/dCMP deaminase zinc-binding protein 
25ABTW07_14881603562..1604740 [+], 1179385237039cyanate permease 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ABTW07_14701582430..1582933 [+], 504385237021hemolysin-coregulated protein A1S_1296

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Proteins        Genes
N/A
N/A