SecReT6
I. Summary
SecReT6 ID600 insolico
StrainErwinia pyrifoliae DSM 12163
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017390
Location712820..749049
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EPYR_00639 (yjjZ)707879..708112 [+], 234387870020hypothetical protein 
2EPYR_00640 (rsmC)708600..709943 [-], 1344387870021ribosomal RNA small subunit methyltransferase 
3EPYR_00641 (rimI)710141..710623 [+], 483387870022acyltransferase for 30S ribosomal subunit protein S18 
4EPYR_00642 (yjjG)710638..711318 [+], 6813878700235'-nucleotidase yjjG 
5EPYR_00643711429..711542 [+], 114387870024hypothetical protein 
6EPYR_00644711696..711788 [+], 93387870025hypothetical protein 
7EPYR_00645712301..712801 [+], 501387870026hypothetical protein 
8EPYR_00646712820..713338 [+], 519387870027hypothetical protein  TssJ
9EPYR_00647713358..714701 [+], 1344387870028hypothetical protein  TssK
10EPYR_00648714719..715960 [+], 1242387870029type VI secretion system, core protein  TssL
11EPYR_00649715964..719596 [+], 3633387870030hypothetical protein  TssM
12EPYR_00650719610..720323 [+], 714387870031hypothetical protein 
13EPYR_00651720341..721348 [+], 1008387870032hypothetical protein  TssA
14EPYR_00652721411..721947 [+], 537387870033hypothetical protein  TssB
15EPYR_00653721951..723450 [+], 1500387870034hypothetical protein  TssC
16EPYR_00654723513..723722 [+], 210387870035hypothetical protein 
17EPYR_00655723994..724476 [+], 483387870036type VI secretion system, effector protein hcp  TssD
18EPYR_00656724999..725736 [+], 738387870037hypothetical protein 
19EPYR_00657726785..727150 [+], 366387870038lipoprotein LprI 
20EPYR_00658728074..728169 [+], 96387870039hypothetical protein 
21EPYR_00659728226..728627 [+], 402387870040type VI secretion system-associated hypothetical protein 
22EPYR_00660728978..730798 [+], 1821387870041hypothetical protein  Fha
23EPYR_00661730795..731589 [+], 795387870042type VI secretion system,Serine/threonine protein phosphatase 
24EPYR_00662731607..732575 [+], 969387870043type VI secretion system-associated hypothetical protein 
25EPYR_00663732585..733406 [+], 822387870044type VI secretion system-associated hypothetical protein  TagJ
26EPYR_00664733403..733969 [+], 567387870045hypothetical protein  TssE
27EPYR_00665733988..735862 [+], 1875387870046hypothetical protein  TssF
28EPYR_00666735859..736917 [+], 1059387870047hypothetical protein  TssG
29EPYR_00667736959..737705 [+], 747387870048hypothetical protein 
30EPYR_00668737718..738038 [+], 321387870049hypothetical protein 
31EPYR_00669 (clpV)738133..740748 [+], 2616387870050type VI secretion system, core protein ATPase  TssH
32EPYR_00670740778..742199 [+], 1422387870051serine/threonine protein kinase 
33EPYR_00671 (vgrG)742246..744207 [+], 1962387870052type VI secretion system, effector protein vgrG  TssI
34EPYR_00672744230..745297 [+], 1068387870053flagellar L-ring protein  PAAR
35EPYR_00673745783..746859 [+], 1077387870054hypothetical protein 
36EPYR_00674 (vgrG)747121..749049 [+], 1929387870055type VI secretion system, effector protein vgrG  TssI
37EPYR_00675748949..749635 [+], 687387870056hypothetical protein 
38EPYR_00676749642..750355 [+], 714387870057hypothetical protein 
39EPYR_00677750463..750876 [+], 414387870058hypothetical protein 
40EPYR_00678751014..751814 [+], 801387870059hypothetical protein 
41EPYR_00679751876..752109 [+], 234387870060hypothetical protein 
42EPYR_00680752270..753310 [-], 1041387870061insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EPYR_00655723994..724476 [+], 483387870036type VI secretion system, effector protein hcp SMA2263

Download FASTA format files
Proteins        Genes
N/A
(1) Smits TH et al. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity. BMC Genomics. 11:02. [PudMed:20047678] in_silico
 
in_silico This literature contains bioinformatics investigation