SecReT6
I. Summary
SecReT6 ID601 insolico
StrainErwinia sp. Ejp617
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017445
Location497104..535367
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EJP617_04430492900..493043 [-], 144385785902hypothetical protein 
2EJP617_04440493973..494356 [-], 384385785903hypothetical protein 
3EJP617_04450494564..494689 [-], 126385785904hypothetical protein 
4EJP617_04460494782..495159 [-], 378385785905hypothetical protein 
5EJP617_04470495221..496021 [-], 801385785906hypothetical protein 
6EJP617_04480496158..496553 [-], 396385785907hypothetical protein 
7EJP617_04490496564..496896 [-], 333385785908hypothetical protein 
8EJP617_04500 (vgrG2)497104..499032 [-], 1929385785909Rhs element Vgr protein  TssI
9EJP617_04510499294..500370 [-], 1077385785910hypothetical protein 
10EJP617_04520500394..500819 [-], 426385785911hypothetical protein 
11EJP617_04530501008..501187 [-], 180385785912hypothetical protein 
12EJP617_04540501600..502103 [-], 504385785913hypothetical protein 
13EJP617_04550502201..502362 [-], 162385785914hypothetical protein 
14EJP617_04560502658..502906 [-], 249385785915hypothetical protein 
15EJP617_04570502863..503729 [-], 867385785916hypothetical protein  PAAR
16EJP617_04580 (vgrG1)503752..505713 [-], 1962385785917Rhs element Vgr protein  TssI
17EJP617_04590505760..507175 [-], 1416385785918Serine/threonine protein kinase 
18EJP617_04600507205..509820 [-], 2616385785919Type VI secretion system family ATPase, ClpV1  TssH
19EJP617_04610509915..510235 [-], 321385785920hypothetical protein 
20EJP617_04620510248..511000 [-], 753385785921hypothetical protein 
21EJP617_04630511036..512094 [-], 1059385785922hypothetical protein  TssG
22EJP617_04640 (vasA)512091..513965 [-], 1875385785923Type VI secretion system family protein  TssF
23EJP617_04650513984..514550 [-], 567385785924hypothetical protein  TssE
24EJP617_04660514547..515368 [-], 822385785925hypothetical protein  TagJ
25EJP617_04670515378..516346 [-], 969385785926hypothetical protein 
26EJP617_04680516364..517158 [-], 795385785927protein phosphatase 2C-like protein 
27EJP617_04690517155..518981 [-], 1827385785928Type VI secretion system, FHA domain-containing protein  Fha
28EJP617_04700519123..519521 [-], 399385785929hypothetical protein 
29EJP617_04710519582..519989 [-], 408385785930hypothetical protein 
30EJP617_04720520515..520925 [-], 411385785931hypothetical protein 
31EJP617_04730521126..521923 [-], 798385785932hypothetical protein 
32EJP617_04740521992..522642 [-], 651385785933hypothetical protein 
33EJP617_04750 (hcp)523718..524200 [-], 483385785934secretion apparatus virulence factor  TssD
34EJP617_04760524472..524729 [-], 258385785935hypothetical protein 
35EJP617_04770524744..526243 [-], 1500385785936hypothetical protein  TssC
36EJP617_04780526247..526783 [-], 537385785937hypothetical protein  TssB
37EJP617_04790526845..527852 [-], 1008385785938Type VI secretion system-associated, ImpA protein  TssA
38EJP617_04800527870..528580 [-], 711385785939type VI secretion system-associated protein 
39EJP617_04810528597..532229 [-], 3633385785940Type VI secretion system, IcmF protein  TssM
40EJP617_04820 (vasF)532233..533474 [-], 1242385785941OmpA family protein  TssL
41EJP617_04830533492..534835 [-], 1344385785942hypothetical protein  TssK
42EJP617_04840534855..535367 [-], 513385785943Type VI secretion system, lipoprotein  TssJ
43EJP617_04850535392..535892 [-], 501385785944hypothetical protein 
44EJP617_04860536652..536765 [-], 114385785945hypothetical protein 
45EJP617_04870 (yjjG)536877..537557 [-], 681385785946nucleotidase 
46EJP617_04880 (rimI)537572..538012 [-], 441385785947ribosomal-protein-alanine N-acetyltransferase 
47EJP617_04890 (holD)537975..538439 [-], 465385785948DNA polymerase III subunit psi 
48EJP617_04900 (rsmC)538441..539595 [+], 1155385785949Ribosomal RNA small subunit methyltransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Thapa SP et al. (2013). Comparative genomics of Japanese Erwinia pyrifoliae strain Ejp617 with closely related erwinias. Genome. 56(2):83-90. [PudMed:23517317] in_silico
 
in_silico This literature contains bioinformatics investigation