SecReT6
I. Summary
SecReT6 ID603 insolico
StrainGeobacter sulfurreducens KN400
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017454
Location3363993..3381428
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111100
ComponentTssGTssJTssKTssM
Number0001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KN400_3096 (cysM)3359178..3360104 [-], 927409913601cysteine synthase B 
2KN400_30983360218..3360808 [+], 591409913602NUDIX hydrolase, coenzyme A pyrophosphatase family 
3KN400_3099 (truC)3360814..3361566 [+], 753409913603tRNA pseudouridine 65 synthase 
4KN400_3100 (msrA)3361651..3362139 [+], 489409913604peptide methionine sulfoxide reductase, S-isomer-specific 
5KN400_3101 (ltaA)3362235..3363281 [+], 1047409913605L-allo-threonine aldolase, stereospecific 
6KN400_31033363278..3363646 [+], 369409913606glutaredoxin-like protein, selenocysteine-containing 
7KN400_3104 (tssL)3363993..3364676 [+], 684409913607type VI secretion system inner membrane protein TssL  TssL
8KN400_3105 (tssM)3364678..3368142 [+], 3465409913608type VI secretion system ATPase and inner membrane protein TssM  TssM
9KN400_31063368189..3370558 [+], 2370409913609type VI secretion system protein  TssA
10KN400_31073370565..3371758 [+], 1194409913610hypothetical protein 
11KN400_31083371758..3372426 [+], 669409913611hypothetical protein  PAAR
12KN400_31093372423..3373451 [+], 1029409913612lipoprotein 
13KN400_31103373467..3375083 [+], 1617409913613hypothetical protein 
14KN400_3111 (tssB)3375185..3375670 [+], 486409913614type VI secretion system needle sheath protein TssB  TssB
15KN400_3112 (tssC)3375681..3377165 [+], 1485409913615type VI secretion system needle sheath protein TssC  TssC
16KN400_3113 (tssD)3377247..3377732 [+], 486409913616type VI secretion system needle tube protein TssD  TssD
17KN400_35193377851..3378306 [+], 456409913617hypothetical protein 
18KN400_35203378361..3379278 [+], 918409913618LysM domain-containing protein 
19KN400_3114 (tssI)3379335..3381428 [+], 2094409913619type VI secretion system needle syringe protein TssI  TssI
20KN400_31153381460..3381960 [+], 501409913620hypothetical protein 
21KN400_31163381981..3383234 [+], 1254409913621hypothetical protein 
22KN400_31173383231..3384274 [+], 1044409913622hypothetical protein 
23KN400_31183384294..3384674 [+], 381409913623hypothetical protein  PAAR
24KN400_31193384726..3385103 [+], 378409913624hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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