SecReT6
I. Summary
SecReT6 ID604 insolico
StrainMarinobacter adhaerens HP15
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017506
Location3643820..3665462
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1HP15_34593639247..3640104 [-], 858385333200hypothetical protein 
2HP15_34603640094..3642742 [-], 2649385333201hypothetical protein 
3HP15_34613642954..3643820 [-], 867385333202hypothetical protein 
4HP15_34623643820..3645943 [-], 2124385333203ImpA family type VI secretion-associated protein  TssI
5HP15_34633646015..3649608 [-], 3594385333204type VI secretion protein IcmF  TssM
6HP15_34643649641..3651095 [-], 1455385333205ImpA domain-containing protein  TssA
7HP15_34653651112..3651744 [-], 633385333206type VI secretion system-associated, VCA0118 
8HP15_34663651756..3653327 [-], 1572385333207two component Fis family sigma54-specific transcriptional regulator 
9HP15_34673653408..3656041 [-], 2634385333208type VI secretion ATPase, ClpV1 family  TssH
10HP15_34683656052..3656879 [-], 828385333209hypothetical protein  TssL
11HP15_34693656883..3658217 [-], 1335385333210hypothetical protein  TssK
12HP15_34703658217..3658750 [-], 534385333211lipoprotein  TssJ
13HP15_34713658747..3660045 [-], 1299385333212type VI secretion system, FHA domain-containing protein  Fha
14HP15_34723660084..3661010 [-], 927385333213hypothetical protein  TssG
15HP15_34733661064..3662836 [-], 1773385333214type VI secretion system, VCA0110  TssF
16HP15_34743662983..3663423 [-], 441385333215type VI secretion system, lysozyme-related protein  TssE
17HP15_34753663427..3664908 [-], 1482385333216hypothetical protein  TssC
18HP15_34763664965..3665462 [-], 498385333217hypothetical protein  TssB
19HP15_34773665741..3666001 [+], 261385333218acyl-coA-binding protein, ACBP 
20HP15_34783666135..3666452 [+], 318385333219integron integrase-like protein 
21HP15_34803666462..3666746 [-], 285385333220hypothetical protein 
22HP15_34793666745..3666882 [+], 138385333221hypothetical protein 
23HP15_3481 (greB)3667023..3667538 [-], 516385333222transcription elongation factor GreB 
24HP15_34823667841..3668122 [+], 282385333223hypothetical protein 
25HP15_34833668140..3669552 [-], 1413385333224two-component, sensor histidine kinase 
26HP15_34843669593..3670273 [-], 681385333225DNA-binding response regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1HP15_38834112887..4113417 [-], 531385333624Hcp protein ABG57132

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Proteins        Genes
N/A
N/A