SecReT6
I. Summary
SecReT6 ID605 insolico
StrainPseudomonas putida BIRD-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017530
Location3415657..3443224
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100011100
ComponentTssGTssJTssKTssM
Number0001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PPUBIRD1_30443412574..3413290 [+], 717386012581Crp/FNR family transcriptional regulator 
2PPUBIRD1_30453413372..3413884 [-], 513386012582AmiS/UreI transporter 
3PPUBIRD1_30463413897..3414481 [-], 585386012583Response regulator receiver/ANTAR domain-containing protein 
4PPUBIRD1_30473414478..3415635 [-], 1158386012584branched-chain amino acid ABC transporter periplasmic component-like protein 
5PPUBIRD1_30483415657..3416778 [-], 1122386012585ATPase  TssH
6PPUBIRD1_3049 (amiE)3416834..3417877 [-], 1044386012586AmiE 
7PPUBIRD1_30513418064..3418930 [-], 867386012587Dihydrodipicolinate synthase 
8PPUBIRD1_30523419268..3422786 [-], 3519386012588Cellulose synthase subunit BcsC 
9PPUBIRD1_30533422774..3423889 [-], 1116386012589Endo-1,4-D-glucanase 
10PPUBIRD1_30543423889..3426177 [-], 2289386012590Cyclic di-GMP-binding protein 
11PPUBIRD1_3055 (bcsA)3426174..3426908 [-], 735386012591BcsA 
12PPUBIRD1_3056 (bcsA_2)3426908..3428782 [-], 1875386012592BcsA_2 
13PPUBIRD1_30573428779..3429486 [-], 708386012593Cellulose synthase, putative 
14PPUBIRD1_30583429483..3429701 [-], 219386012594hypothetical protein 
15PPUBIRD1_30593429698..3431311 [-], 1614386012595hypothetical protein 
16PPUBIRD1_30603431304..3431489 [-], 186386012596hypothetical protein 
17PPUBIRD1_30613431486..3432976 [-], 1491386012597hypothetical protein 
18PPUBIRD1_30623433279..3435132 [+], 1854386012598ABC transporter ATP-binding protein 
19PPUBIRD1_30633435210..3438830 [-], 3621386012599ImcF domain-containing protein  TssM
20PPUBIRD1_30643438827..3440290 [-], 1464386012600ImpA domain-containing protein  TssA
21PPUBIRD1_30653440278..3440634 [-], 357386012601hypothetical protein 
22PPUBIRD1_30663441255..3441758 [+], 504386012602hypothetical protein  TssB
23PPUBIRD1_30673441776..3443224 [+], 1449386012603hypothetical protein  TssC
24PPUBIRD1_30683443215..3445614 [+], 2400386012604hypothetical protein 
25PPUBIRD1_30693446196..3446510 [+], 315386012605hypothetical protein 
26PPUBIRD1_30703446912..3447583 [+], 672386012606hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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