SecReT6
I. Summary
SecReT6 ID607 insolico
StrainPseudomonas stutzeri DSM 4166
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017532
Location120052..130065
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100000
ComponentTssGTssJTssKTssM
Number0111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSTAA_0100115090..116634 [-], 1545386018740hypothetical protein 
2PSTAA_0101116646..116960 [-], 315386018741hypothetical protein 
3PSTAA_0102117670..120003 [-], 2334386018742hypothetical protein 
4PSTAA_0103120052..122100 [-], 2049386018743Rhs element Vgr protein  TssI
5PSTAA_0104122122..123093 [-], 972386018744protein kinase  Stk1
6PSTAA_0105123090..123821 [-], 732386018745protein phosphatase 2C domain-containing protein  Stp1
7PSTAA_0106123821..127360 [-], 3540386018746ImcF domain-containing protein  TssM
8PSTAA_0107127362..128243 [-], 882386018747hypothetical protein  TssL
9PSTAA_0108128249..129580 [-], 1332386018748hypothetical protein  TssK
10PSTAA_0109129583..130065 [-], 483386018749hypothetical protein  TssJ
11PSTAA_0110130070..131266 [-], 1197386018750FHA domain-containing protein  Fha
12PSTAA_0111131287..131421 [-], 135386018751hypothetical protein 
13PSTAA_0113131969..132670 [+], 702386018752nickel-dependent hydrogenase b-type cytochrome subunit 
14PSTAA_0114132705..133169 [-], 465386018753cytochrome c, class II 
15PSTAA_0115 (gabD-2)133470..134918 [+], 1449386018754succinate-semialdehyde dehydrogenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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