SecReT6
I. Summary
SecReT6 ID608 insolico
StrainPantoea ananatis AJ13355
Repliconplasmid pEA320 [Browse all T6SS(s) in this replicon]
AccessionNC_017533
Location143283..176025
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PAJ_p0131 (yiaE)138661..139437 [+], 777386018490putative 2-hydroxyacid dehydrogenase HI1556 YiaE 
2PAJ_p0132 (glsA1)139605..140525 [-], 921386018491glutaminase 1 GlsA1 
3PAJ_p0133140796..141599 [+], 804386018492hypothetical protein 
4PAJ_p0134 (clcA)141526..142203 [+], 678386018493truncated H(+)/Cl(-) exchange transporter ClcA 
5PAJ_p0135143283..143780 [+], 498386018494hypothetical protein  TssB
6PAJ_p0136143862..145361 [+], 1500386018495hypothetical protein  TssC
7PAJ_p0137145379..146719 [+], 1341386018496hypothetical protein  TssK
8PAJ_p0138146716..147405 [+], 690386018497hypothetical protein  TssL
9PAJ_p0139148065..149126 [+], 1062386018498putative OmpA-family membrane protein  TagL
10PAJ_p0140149131..149622 [+], 492386018499hemolysin Co-regulated protein Hcp  TssD
11PAJ_p0141 (clpV)149796..152456 [+], 2661386018500chaperone ClpV  TssH
12PAJ_p0142152395..154797 [+], 2403386018501hypothetical protein  TssI
13PAJ_p0143154812..157043 [+], 2232386018502hypothetical protein 
14PAJ_p0144157047..157751 [+], 705386018503hypothetical protein 
15PAJ_p0145157977..158258 [+], 282386018504hypothetical protein 
16PAJ_p0146158401..158889 [+], 489386018505hypothetical protein 
17PAJ_p0147159070..160278 [+], 1209386018506hypothetical protein 
18PAJ_p0148160275..162131 [+], 1857386018507hypothetical protein  TssM
19PAJ_p0149162025..163761 [+], 1737386018508hypothetical protein  TssM
20PAJ_p0150163758..165359 [+], 1602386018509hypothetical protein  TssA
21PAJ_p0151165390..166667 [+], 1278386018510hypothetical protein  PAAR
22PAJ_p0152166728..167093 [+], 366386018511hypothetical protein 
23PAJ_p0153167624..168052 [+], 429386018512hypothetical protein 
24PAJ_p0154168276..169550 [+], 1275386018513hypothetical protein  PAAR
25PAJ_p0155169550..169984 [+], 435386018514hypothetical protein 
26PAJ_p0156170526..172280 [+], 1755386018515hypothetical protein  TssF
27PAJ_p0157172244..173329 [+], 1086386018516hypothetical protein  TssG
28PAJ_p0158173352..173852 [+], 501386018517hypothetical protein  TssJ
29PAJ_p0159173852..174307 [+], 456386018518hypothetical protein  TssE
30PAJ_p0160174634..176025 [+], 1392386018519hypothetical protein  TssA
31PAJ_p0161 (ydcX)176353..176526 [-], 174386018520inner membrane protein YdcX 
32PAJ_p0162 (ybcL)176895..177431 [+], 537386018521YbcL protein 
33PAJ_p0163 (proP)177619..178968 [-], 1350386018522proline/betaine transporter ProP 
34PAJ_p0164 (blt)179331..180533 [-], 1203386018523multidrug resistance protein 2 Blt 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PAJ_p0140149131..149622 [+], 492386018499hemolysin Co-regulated protein Hcp EC042_4529

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Proteins        Genes
N/A
N/A