SecReT6
I. Summary
SecReT6 ID609 insolico
StrainKlebsiella pneumoniae KCTC 2242
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017540
Location2049854..2076278
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111101
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KPN2242_097252044927..2045841 [-], 915386034507LysR family transcriptional regulator 
2KPN2242_097302045950..2046711 [+], 7623860345087-alpha-hydroxysteroid dehydrogenase 
3KPN2242_097352046928..2048460 [+], 1533386034509putative metal-dependent phosphohydrolase with HD subdomain 
4KPN2242_097402048470..2048595 [-], 126386034510hypothetical protein 
5KPN2242_097452048647..2049195 [-], 549386034511putative intracellular protease/amidase 
6KPN2242_097502049854..2050345 [+], 492386034512hypothetical protein  TssB
7KPN2242_097552050388..2051932 [+], 1545386034513hypothetical protein  TssC
8KPN2242_097602051945..2053285 [+], 1341386034514hypothetical protein  TssK
9KPN2242_097652053282..2053971 [+], 690386034515hypothetical protein  TssL
10KPN2242_097702053968..2055674 [+], 1707386034516putative outer membrane protein  TagL
11KPN2242_097752055679..2056170 [+], 492386034517type VI secretion system effector  TssD
12KPN2242_097802056435..2059065 [+], 2631386034518putative protease  TssH
13KPN2242_097852059083..2061461 [+], 2379386034519Rhs element Vgr protein  TssI
14KPN2242_097902061461..2062240 [+], 780386034520hypothetical protein 
15KPN2242_097952062303..2062833 [+], 531386034521lipoprotein 
16KPN2242_098002062902..2063432 [+], 531386034522lipoprotein 
17KPN2242_098052063501..2064031 [+], 531386034523lipoprotein 
18KPN2242_098102064019..2066460 [+], 2442386034524hypothetical protein 
19KPN2242_098152066481..2066738 [+], 258386034525PaaR repeat-containing protein  PAAR
20KPN2242_098202066735..2067874 [+], 1140386034526hypothetical protein 
21KPN2242_098252067858..2071286 [+], 3429386034527ImcF domain-containing protein  TssM
22KPN2242_098302071283..2072875 [+], 1593386034528type VI secretion-associated protein  TssA
23KPN2242_098352072955..2074709 [+], 1755386034529type VI secretion protein  TssF
24KPN2242_098402074673..2075758 [+], 1086386034530hypothetical protein  TssG
25KPN2242_098452075751..2076278 [+], 528386034531hypothetical protein  TssJ
26KPN2242_098502076405..2076899 [+], 495386034532hypothetical protein 
27KPN2242_098552076966..2077679 [-], 714386034533oxidoreductase 
28KPN2242_098602077753..2078346 [+], 594386034534putative transcriptional regulator 
29KPN2242_098652078351..2079106 [-], 756386034535putative dehydrogenase/reductase oxidoreductase protein 
30KPN2242_098702079265..2080143 [+], 879386034536putative ARAC-type regulatory protein 
31KPN2242_098752080194..2080400 [-], 207386034537hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1KPN2242_097752055679..2056170 [+], 492386034517type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A