SecReT6
I. Summary
SecReT6 ID610 insolico
StrainKlebsiella pneumoniae KCTC 2242
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017540
Location2959087..2979979
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001110011
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KPN2242_142152955204..2955479 [-], 276386035385hypothetical protein 
2KPN2242_142202955752..2956336 [+], 585386035386peptidyl-tRNA hydrolase 
3KPN2242_142252956454..2957545 [+], 1092386035387GTP-binding protein YchF 
4KPN2242_142302957628..2957957 [-], 330386035388hypothetical protein 
5KPN2242_142352958041..2958955 [-], 915386035389periplasmic binding protein/LacI transcriptional regulator 
6KPN2242_142402959087..2960502 [-], 1416386035390hypothetical protein  TssA
7KPN2242_142452960522..2960965 [-], 444386035391hypothetical protein  TssE
8KPN2242_142502960968..2961504 [-], 537386035392hypothetical protein  TssJ
9KPN2242_142552961485..2962501 [-], 1017386035393hypothetical protein  TssG
10KPN2242_142602962531..2964294 [-], 1764386035394type VI secretion system protein ImpG  TssF
11KPN2242_142652964428..2967394 [-], 2967386035395ImcF-related family protein  TssM
12KPN2242_142702967859..2969070 [-], 1212386035396hypothetical protein 
13KPN2242_142752969075..2969332 [-], 258386035397hypothetical protein  PAAR
14KPN2242_142802969403..2969693 [+], 291386035398hypothetical protein 
15KPN2242_142852970887..2970997 [-], 111386035399hypothetical protein 
16KPN2242_142902971169..2972584 [-], 1416386035400transglycosylase 
17KPN2242_142952972855..2973046 [+], 192386035401hypothetical protein 
18KPN2242_143002973199..2975826 [-], 2628386035402ImpA family type VI secretion-associated protein  TssI
19KPN2242_143052976006..2976101 [-], 96386035403hypothetical protein 
20KPN2242_143102976288..2977985 [-], 1698386035404hypothetical protein  TagL
21KPN2242_143152977989..2978642 [-], 654386035405type VI secretion system protein ImpK  TssL
22KPN2242_143202978639..2979979 [-], 1341386035406hypothetical protein  TssK
23KPN2242_143252980548..2980877 [+], 330386035407hypothetical protein 
24KPN2242_143302980992..2981531 [+], 540386035408nucleoprotein/polynucleotide-associated enzyme 
25KPN2242_143352981557..2982255 [-], 699386035409putative ribosomal large subunit pseudouridine synthase A 
26KPN2242_143402982446..2982928 [+], 483386035410cold shock protein E 
27KPN2242_143452983038..2983937 [+], 900386035411putative LysR-family transcriptional regulator 
28KPN2242_143502983912..2984718 [-], 807386035412extracellular solute-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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