SecReT6
I. Summary
SecReT6 ID615 insolico
StrainPseudomonas aeruginosa NCGM2.S1
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_017549
Location2732174..2754590
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1NCGM2_25502728078..2731440 [-], 3363386065489putative Rhs family protein  RhsP2 (e)
2NCGM2_25512731437..2731841 [-], 405386065490hypothetical protein 
3NCGM2_25522732174..2734210 [-], 2037386065491hypothetical protein  TssI
4NCGM2_2553 (hcpD)2734406..2734924 [-], 519386065492secreted protein  TssD
5NCGM2_25542735622..2737178 [+], 1557386065493hypothetical protein  TssA
6NCGM2_25552737214..2737720 [+], 507386065494hypothetical protein  TssB
7NCGM2_25562737748..2739223 [+], 1476386065495hypothetical protein  TssC
8NCGM2_25572739236..2739643 [+], 408386065496hypothetical protein  TssE
9NCGM2_25582739975..2741762 [+], 1788386065497hypothetical protein  TssF
10NCGM2_25592741726..2742733 [+], 1008386065498hypothetical protein  TssG
11NCGM2_25602742746..2745373 [+], 2628386065499putative ClpA/B-type protease  TssH
12NCGM2_25612745384..2746895 [+], 1512386065500putative transcriptional regulator  Sfa2
13NCGM2_25622746984..2747124 [+], 141386065501hypothetical protein 
14NCGM2_25632747142..2748335 [+], 1194386065502hypothetical protein  Fha
15NCGM2_25642748332..2748847 [+], 516386065503putative lipoprotein  TssJ
16NCGM2_25652748844..2750175 [+], 1332386065504hypothetical protein  TssK
17NCGM2_25662750178..2751047 [+], 870386065505hypothetical protein  TssL
18NCGM2_25672751063..2754590 [+], 3528386065506hypothetical protein  TssM
19NCGM2_2568 (stp1)2754590..2755318 [+], 729386065507serine/threonine phosphoprotein phosphatase  Stp1
20NCGM2_2569 (stk1)2755315..2756304 [+], 990386065508serine-threonine kinase  Stk1
21NCGM2_25702756332..2756661 [-], 330386065509hypothetical protein 
22NCGM2_25712756958..2757419 [+], 462386065510hypothetical protein 
23NCGM2_2572 (folE)2757484..2758029 [-], 546386065511GTP cyclohydrolase I 
24NCGM2_25732758107..2758664 [-], 558386065512hypothetical protein 
25NCGM2_25742758721..2759041 [-], 321386065513hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435 , PSPTO_5435, PA14_43100, PSPTO_5435, PA3487, PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1NCGM2_0270(hcpD)296633..297151 [-], 519386063243secreted protein PSPTO_5435
2NCGM2_2397(hcpD)2567474..2567992 [-], 519386065336secreted protein PSPTO_5435
3NCGM2_25502728078..2731440 [-], 3363386065489putative Rhs family protein PA14_43100
4NCGM2_2553(hcpD)2734406..2734924 [-], 519386065492secreted protein PSPTO_5435
5NCGM2_4629(pldA)4983314..4986613 [+], 3300386067533phospholipase D PA3487
6NCGM2_6030(hcpD)6424591..6425109 [-], 519386068921secreted protein PSPTO_5435

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Proteins        Genes

Homology Immunity protein list
PA3488

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1NCGM2_46304986706..4987740 [+], 1035386067534hypothetical protein PA3488

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Proteins        Genes
N/A