SecReT6
I. Summary
SecReT6 ID617 insolico
StrainPantoea ananatis PA13
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017554
Location1818308..1855693
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PAGR_g16531813311..1814765 [-], 1455386078871AMP nucleosidase Amn 
2PAGR_g16541815157..1816575 [+], 1419386078872MATE efflux family protein YeeO 
3PAGR_g16551817685..1818284 [+], 600386078873type VI secretion system-associated protein 
4PAGR_g16561818308..1818811 [+], 504386078874type VI secretion system protein VasD  TssJ
5PAGR_g16571818833..1820173 [+], 1341386078875type VI secretion system protein ImpJ  TssK
6PAGR_g16581820190..1821431 [+], 1242386078876type VI secretion system protein ImpK  TssL
7PAGR_g16591821435..1825061 [+], 3627386078877type VI secretion system protein IcmF  TssM
8PAGR_g16601825076..1825789 [+], 714386078878type VI secretion system protein ImpM 
9PAGR_g16611825800..1826822 [+], 1023386078879type VI secretion system protein ImpA  TssA
10PAGR_g16621826903..1827433 [+], 531386078880type VI secretion system protein ImpB  TssB
11PAGR_g16631827433..1828932 [+], 1500386078881type VI secretion system protein ImpC  TssC
12PAGR_g16641829513..1829995 [+], 483386078882type VI secretion system effector protein hcp  TssD
13PAGR_g16651830064..1830894 [+], 831386078883hypothetical protein 
14PAGR_g16661830891..1831706 [+], 816386078884hypothetical protein 
15PAGR_g16671832272..1834167 [+], 1896386078885FHA domain-containing protein  Fha
16PAGR_g16681834164..1834955 [+], 792386078886protein serine/threonine phosphatase PppA 
17PAGR_g16691834966..1835964 [+], 999386078887putative type VI secretion system-associated protein 
18PAGR_g16701835981..1836808 [+], 828386078888putative type VI secretion system-associated protein  TagJ
19PAGR_g16711836798..1837373 [+], 576386078889type VI secretion system lysozyme-like protein  TssE
20PAGR_g16721837376..1839253 [+], 1878386078890type VI secretion system protein ImpG  TssF
21PAGR_g16731839250..1840299 [+], 1050386078891type VI secretion system protein ImpH  TssG
22PAGR_g16741840353..1842962 [+], 2610386078892type VI secretion system protein VasG  TssH
23PAGR_g16751842992..1844455 [+], 1464386078893type VI secretion system, serine- threonine protein kinase 
24PAGR_g16761844467..1846710 [+], 2244386078894putative type VI secretion system effector protein VgrG  TssI
25PAGR_g16771846720..1847100 [+], 381386078895hypothetical protein 
26PAGR_g16781847302..1847676 [+], 375386078896hypothetical protein 
27PAGR_g16791847771..1848157 [+], 387386078897hypothetical protein 
28PAGR_g16801848529..1851069 [+], 2541386078898pentapeptide repeat-containing protein 
29PAGR_g16811851066..1852136 [+], 1071386078899pentapeptide repeat-containing protein 
30PAGR_g16821852149..1852754 [+], 606386078900hypothetical protein 
31PAGR_g16831852764..1853156 [+], 393386078901hypothetical protein 
32PAGR_g16841853204..1855693 [+], 2490386078902putative type VI secretion system effector protein VgrG  TssI
33PAGR_g16851855690..1856070 [+], 381386078903hypothetical protein 
34PAGR_g16861856323..1857069 [+], 747386078904hypothetical protein 
35PAGR_g16871857080..1857928 [+], 849386078905hypothetical protein 
36PAGR_g16881857941..1858381 [+], 441386078906hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263 , SMA3456, SMA2263, ECL_01567, ECL_03140

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PAGR_g15831735435..1735917 [+], 483386078802hemolysin co-regulated protein Hcp1 SMA2263
2PAGR_g15841735948..1736430 [+], 483386078803hemolysin co-regulated protein Hcp1 SMA3456
3PAGR_g16641829513..1829995 [+], 483386078882type VI secretion system effector protein hcp SMA2263
4PAGR_g16891858385..1862773 [+], 4389386078907Rhs-family protein ECL_01567
5PAGR_g30823340739..3344899 [+], 4161386080271putative membrane-bound sugar-binding protein RhsD ECL_03140

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Proteins        Genes
N/A
N/A