SecReT6
I. Summary
SecReT6 ID619 insolico
StrainShewanella baltica BA175
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017571
Location2416676..2439185
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Sbal175_20412412797..2414851 [-], 2055386324498serine/threonine protein kinase 
2Sbal175_20422415348..2416637 [+], 1290386324499FHA domain-containing protein  Fha
3Sbal175_20432416676..2417161 [+], 486386324500type VI secretion lipoprotein  TssJ
4Sbal175_20442417185..2418513 [+], 1329386324501type VI secretion protein  TssK
5Sbal175_20452418553..2419863 [+], 1311386324502DotU family type IV / VI secretion system protein  TssL
6Sbal175_20462419888..2423424 [+], 3537386324503type VI secretion protein IcmF  TssM
7Sbal175_20472423406..2424122 [+], 717386324504type VI secretion system-associated protein 
8Sbal175_20482424137..2424904 [+], 768386324505protein serine/threonine phosphatase 
9Sbal175_20492424951..2426042 [+], 1092386324506type VI secretion-associated protein, ImpA family  TssA
10Sbal175_20502426102..2426602 [+], 501386324507type VI secretion protein  TssB
11Sbal175_20512426604..2428097 [+], 1494386324508type VI secretion protein EvpB  TssC
12Sbal175_20522428170..2429708 [+], 1539386324509type VI secretion protein EvpB  TssC
13Sbal175_20532429725..2430522 [+], 798386324510virulence protein SciE type  TagJ
14Sbal175_20542430560..2431048 [+], 489386324511type VI secretion system lysozyme-like protein  TssE
15Sbal175_20552431048..2432877 [+], 1830386324512type VI secretion protein  TssF
16Sbal175_20562432874..2433872 [+], 999386324513type VI secretion protein  TssG
17Sbal175_20572433892..2436504 [+], 2613386324514type VI secretion ATPase, ClpV1 family  TssH
18Sbal175_20582436816..2437295 [+], 480386324515hypothetical protein  TssD
19Sbal175_20592437371..2439185 [+], 1815386324516ImpA family type VI secretion-associated protein  TssI
20Sbal175_20602439223..2439513 [+], 291386324517PAAR repeat-containing protein  PAAR
21Sbal175_20612439516..2440565 [+], 1050386324518hypothetical protein 
22Sbal175_20622440550..2441545 [+], 996386324519hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VPA1027

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Sbal175_20582436816..2437295 [+], 480386324515hypothetical protein VPA1027

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Proteins        Genes
N/A
N/A