SecReT6
I. Summary
SecReT6 ID620 insolico
StrainRalstonia solanacearum Po82
Repliconmegaplasmid [Browse all T6SS(s) in this replicon]
AccessionNC_017575
Location1199515..1233446
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111411111
ComponentTssGTssJTssKTssM
Number1011
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RSPO_m01062 (otsA)1197161..1198369 [+], 1209386336065alpha,alpha-trehalose-phosphate synthase (UDP-forming) 
2RSPO_m010631198485..1199267 [+], 783386336066transmembrane protein 
3RSPO_m010641199321..1199494 [-], 174386336067transmembrane protein 
4RSPO_m010651199515..1200198 [-], 684386336068hypothetical protein  TssI
5RSPO_m010661200259..1201047 [-], 789386336069hypothetical protein  TssL
6RSPO_m010671201044..1202390 [-], 1347386336070hypothetical protein  TssK
7RSPO_m010681202445..1202591 [-], 147386336071putative transmembrane protein 
8RSPO_m010691203399..1204046 [+], 648386336072lipoprotein 
9RSPO_m010701204083..1204595 [+], 513386336073hypothetical protein  TssB
10RSPO_m010711204588..1206078 [+], 1491386336074hypothetical protein  TssC
11RSPO_m01072 (sciK)1206167..1206670 [+], 504386336075secretion system protein (evpc-like), hemolysin-coregulated protein  TssD
12RSPO_m010731206731..1207204 [+], 474386336076hypothetical protein  TssE
13RSPO_m010741207267..1209117 [+], 1851386336077hypothetical protein  TssF
14RSPO_m010751209081..1210184 [+], 1104386336078hypothetical protein  TssG
15RSPO_m01076 (clpB)1210217..1212940 [+], 2724386336079chaperone clpb  TssH
16RSPO_m010771212977..1213861 [+], 885386336080VgrG protein  TssI
17RSPO_m010781213599..1214219 [+], 621386336081vgr-related protein  TssI
18RSPO_m010791214697..1215638 [+], 942386336082hypothetical protein 
19RSPO_m010811215822..1215974 [+], 153386336083hypothetical protein 
20RSPO_m010821215990..1217168 [+], 1179386336084hypothetical protein 
21RSPO_m010831217215..1217691 [+], 477386336085hypothetical protein 
22RSPO_m010841217952..1219325 [+], 1374386336086twin-arginine translocation pathway signal harboring protein 
23RSPO_m010851219458..1220537 [+], 1080386336087hypothetical protein  TssA
24RSPO_m010871220595..1221437 [-], 843386336088peptidoglycan-associated lipoprotein  TagL
25RSPO_m010861221434..1222420 [-], 987386336089hypothetical protein 
26RSPO_m01088 (icmF)1222417..1226352 [-], 3936386336090transmembrane protein  TssM
27RSPO_m010891226389..1227885 [-], 1497386336091hypothetical protein 
28RSPO_m010901227896..1228165 [-], 270386336092hypothetical protein  PAAR
29RSPO_m010911228204..1229052 [-], 849386336093L-alanyl-D-glutamate peptidase 
30RSPO_m010921229338..1230096 [+], 759386336094hypothetical protein 
31RSPO_m010931230234..1233446 [+], 3213386336095vgr-related protein  TssI
32RSPO_m010941233241..1233609 [+], 369386336096hypothetical protein 
33RSPO_m010951233666..1233947 [+], 282386336097hypothetical protein 
34RSPO_m010961233982..1234362 [+], 381386336098hypothetical protein 
35RSPO_m010971234346..1234486 [-], 141386336099hypothetical protein 
36RSPO_m010981234538..1235047 [-], 510386336100hypothetical protein 
37RSPO_m010991235335..1235583 [-], 249386336101hypothetical protein 
38RSPO_m01100 (aspC)1235604..1236791 [-], 1188386336102aspartate aminotransferase 
39RSPO_m01101 (nac)1236935..1237822 [-], 888386336103nitrogen assimilation transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
RSp0745

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1RSPO_m01072(sciK)1206167..1206670 [+], 504386336075secretion system protein (evpc-like), hemolysin-coregulated protein RSp0745

Download FASTA format files
Proteins        Genes
N/A
N/A