SecReT6
I. Summary
SecReT6 ID634 insolico
StrainEscherichia coli str. 'clone D i14'
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017652
Location3111538..3137828
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1i14_31033106703..3107944 [+], 1242386635470cysteine sulfinate desulfinase 
2i14_3104 (ygdK)3107944..3108387 [+], 444386635471hypothetical protein 
3i14_3105 (ygdL)3108438..3109244 [-], 807386635472hypothetical protein 
4i14_3106 (mltA)3109321..3110418 [-], 1098386635473murein transglycosylase A 
5i14_31073111538..3112059 [+], 522386635474hypothetical protein  TssB
6i14_31083112112..3113656 [+], 1545386635475hypothetical protein  TssC
7i14_31093113676..3115013 [+], 1338386635476hypothetical protein  TssK
8i14_31103115010..3115675 [+], 666386635477hypothetical protein  TssL
9i14_31113115688..3117340 [+], 1653386635478hypothetical protein  TagL
10i14_31123117398..3117889 [+], 492386635479secreted protein Hcp  TssD
11i14_31133118081..3120717 [+], 2637386635480ClpB protein  TssH
12i14_31143120717..3123191 [+], 2475386635481hypothetical protein  TssI
13i14_31153123206..3124030 [+], 825386635482hypothetical protein 
14i14_31163124027..3126003 [+], 1977386635483hypothetical protein 
15i14_31173126013..3126285 [+], 273386635484hypothetical protein  PAAR
16i14_31183126285..3127718 [+], 1434386635485hypothetical protein 
17i14_31193127890..3131063 [+], 3174386635486hypothetical protein  TssM
18i14_31203131029..3132666 [+], 1638386635487hypothetical protein  TssA
19i14_31213132700..3134460 [+], 1761386635488hypothetical protein  TssF
20i14_31223134424..3135503 [+], 1080386635489hypothetical protein  TssG
21i14_31233135484..3136020 [+], 537386635490hypothetical protein  TssJ
22i14_31243136024..3136452 [+], 429386635491hypothetical protein  TssE
23i14_31253136452..3137828 [+], 1377386635492hypothetical protein  TssA
24i14_31273138128..3139084 [-], 9573866354932-hydroxyacid dehydrogenase 
25i14_31283139147..3139743 [-], 597386635494phosphosugar isomerase 
26i14_31293139746..3140921 [-], 1176386635495Beta-cystathionase 
27i14_31303140921..3142501 [-], 1581386635496PTS system, maltose and glucose-specific IIABC 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1i14_31123117398..3117889 [+], 492386635479secreted protein Hcp EC042_4529

Download FASTA format files
Proteins        Genes
N/A
N/A