SecReT6
I. Summary
SecReT6 ID635 insolico
StrainEscherichia coli O55:H7 str. RM12579
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017656
Location243482..289921
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECO55CA74_01025 (rnhA)239035..239502 [-], 468387505136ribonuclease H 
2ECO55CA74_01030239567..240298 [+], 732387505137DNA polymerase III subunit epsilon 
3ECO55CA74_01035240835..241635 [+], 801387505138hypothetical protein 
4ECO55CA74_01040241820..242116 [-], 297387505139hypothetical protein 
5ECO55CA74_01045242113..242568 [-], 456387505140hypothetical protein 
6ECO55CA74_01050242565..243284 [-], 720387505141hypothetical protein 
7ECO55CA74_01055243482..243961 [-], 480387505142hypothetical protein  TssD
8ECO55CA74_01060243927..245336 [-], 1410387505143ImpA domain-containing protein  TssA
9ECO55CA74_01065245347..248871 [-], 3525387505144hypothetical protein  TssM
10ECO55CA74_01070248890..250302 [-], 1413387505145ImpA domain-containing protein  TssA
11ECO55CA74_01075250307..251050 [-], 744387505146type VI secretion-associated protein 
12ECO55CA74_01080251047..253818 [-], 2772387505147type VI secretion ATPase, ClpV1 family protein  TssH
13ECO55CA74_01085253827..254588 [-], 762387505148putative membrane protein Aec26  TssL
14ECO55CA74_01090254593..255924 [-], 1332387505149hypothetical protein  TssK
15ECO55CA74_01095255927..256451 [-], 525387505150type VI secretion lipoprotein  TssJ
16ECO55CA74_01100256448..257458 [-], 1011387505151type VI secretion system protein ImpI  Fha
17ECO55CA74_01105257752..258834 [-], 1083387505152hypothetical protein  TssG
18ECO55CA74_01110258798..260648 [-], 1851387505153type VI secretion system protein ImpG  TssF
19ECO55CA74_01115260652..261065 [-], 414387505154hypothetical protein  TssE
20ECO55CA74_01120261072..261620 [-], 549387505155hypothetical protein  TssC
21ECO55CA74_01125261657..262547 [-], 891387505156hypothetical protein  TssC
22ECO55CA74_01130262598..262822 [-], 225387505157hypothetical protein 
23ECO55CA74_01135262857..263357 [-], 501387505158hypothetical protein  TssB
24ECO55CA74_01140263784..263927 [+], 144387505159hypothetical protein 
25ECO55CA74_01145264054..264572 [+], 519387505160hypothetical protein  TssD
26ECO55CA74_01150264782..266923 [+], 2142387505161protein VgrG  TssI
27ECO55CA74_01155266999..271231 [+], 4233387505162hypothetical protein  PAAR
28ECO55CA74_01160271491..272087 [+], 597387505163putative ankyrin repeat containing virulence factor 
29ECO55CA74_01165272269..273777 [+], 1509387505164RhsG core protein 
30ECO55CA74_01170273780..274355 [+], 576387505165hypothetical protein 
31ECO55CA74_01175275101..276237 [+], 1137387505166ISEc3, transposase 
32ECO55CA74_01180276240..278000 [+], 1761387505167hypothetical protein 
33ECO55CA74_01185277984..278154 [+], 171387505168hypothetical protein 
34ECO55CA74_01190278202..278465 [+], 264387505169hypothetical protein 
35ECO55CA74_01195278646..279818 [+], 1173387505170transposase yncI 
36ECO55CA74_01200279936..280706 [-], 771387505171C-N hydrolase family amidase 
37ECO55CA74_01205280860..281333 [+], 474387505172C-lysozyme inhibitor 
38ECO55CA74_01210 (fadE)281376..283820 [-], 2445387505173acyl-CoA dehydrogenase 
39ECO55CA74_01215 (gmhA)284060..284638 [+], 579387505174phosphoheptose isomerase 
40ECO55CA74_01220284743..285510 [+], 768387505175glutamine amidotransferase 
41ECO55CA74_01225285481..286221 [-], 741387505176hypothetical protein 
42ECO55CA74_01230286377..286655 [-], 279387505177RelE/StbE family addiction module toxin 
43ECO55CA74_01235286658..286918 [-], 261387505178DNA-damage-inducible protein J 
44ECO55CA74_01240287128..287877 [+], 750387505179putative lipoprotein and C40 family peptidase 
45ECO55CA74_01245288053..288349 [+], 297387505180transposase 
46ECO55CA74_01250288832..289083 [-], 252387505181flagellar system protein 
47ECO55CA74_01255289136..289921 [+], 786387505182hypothetical protein  TagL
48ECO55CA74_01260289992..291047 [+], 1056387505183DNA polymerase IV 
49ECO55CA74_01265291099..291392 [+], 294387505184putative antitoxin of the YafO-YafN toxin-antitoxin system 
50ECO55CA74_01270291395..291793 [+], 399387505185putative toxin YafO 
51ECO55CA74_01275291803..292255 [+], 453387505186putative acyltransferase 
52ECO55CA74_01280292562..292828 [+], 267387505187hypothetical protein 
53ECO55CA74_01285 (prfH)292797..293297 [+], 501387505188peptide chain release factor-like protein 
54ECO55CA74_01290293354..294811 [-], 1458387505189aminoacyl-histidine dipeptidase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECO55CA74_01145264054..264572 [+], 519387505160hypothetical protein ABG57132

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Proteins        Genes
N/A
N/A