SecReT6
SecReT6
I. Summary
SecReT6 ID637 insolico
StrainEscherichia coli KO11FL
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017660
Location1856454..1891958
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111231111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KO11_08715 (argA)1852679..1854010 [-], 1332386700239N-acetylglutamate synthase 
2KO11_08720 (amiC)1854242..1855495 [+], 1254386700240N-acetylmuramoyl-L-alanine amidase 
3KO11_087251855841..1856389 [-], 549386700241hypothetical protein 
4KO11_087301856454..1857830 [-], 1377386700242hypothetical protein  TssA
5KO11_087351857830..1858258 [-], 429386700243hypothetical protein  TssE
6KO11_087401858262..1858798 [-], 537386700244hypothetical protein  TssJ
7KO11_087451858779..1859858 [-], 1080386700245hypothetical protein  TssG
8KO11_087501859822..1861582 [-], 1761386700246type VI secretion system protein ImpG  TssF
9KO11_087551862142..1862564 [-], 423386700247hypothetical protein 
10KO11_087601862557..1862661 [-], 105386700248hypothetical protein 
11KO11_087651862661..1862855 [-], 195386700249hypothetical protein 
12KO11_087701863235..1863597 [-], 363386700250hypothetical protein 
13KO11_087751863590..1863901 [+], 312386700251putative IS602 transposase OrfA 
14KO11_087801864090..1864767 [+], 678386700252putative IS602 transposase OrfB 
15KO11_087851864760..1865236 [-], 477386700253hypothetical protein  PAAR
16KO11_087901865242..1866600 [-], 1359386700254hypothetical protein  TssA
17KO11_087951867145..1867252 [-], 108386700255hypothetical protein 
18KO11_088001867307..1867705 [-], 399386700256hypothetical protein 
19KO11_088051867702..1868619 [-], 918386700257hypothetical protein  PAAR
20KO11_088101868625..1870262 [-], 1638386700258hypothetical protein  TssA
21KO11_088151870228..1873617 [-], 3390386700259hypothetical protein  TssM
22KO11_088201873617..1874831 [-], 1215386700260hypothetical protein 
23KO11_088251874909..1875460 [-], 552386700261hypothetical protein 
24KO11_088301875462..1875884 [-], 423386700262hypothetical protein 
25KO11_088351876085..1878592 [-], 2508386700263hypothetical protein  TssI
26KO11_088401878917..1879453 [-], 537386700264hypothetical protein 
27KO11_088451879443..1880294 [-], 852386700265hypothetical protein 
28KO11_088501880296..1882782 [-], 2487386700266putative VGR-like protein  TssI
29KO11_088551882794..1885439 [-], 2646386700267ATPase  TssH
30KO11_088601885630..1886121 [-], 492386700268Hcp-like protein  TssD
31KO11_088651886179..1887831 [-], 1653386700269putative outer membrane lipoprotein  TagL
32KO11_088701887844..1888509 [-], 666386700270type VI secretion system protein ImpK  TssL
33KO11_088751888506..1889843 [-], 1338386700271hypothetical protein  TssK
34KO11_088801889861..1891399 [-], 1539386700272hypothetical protein  TssC
35KO11_088851891458..1891958 [-], 501386700273hypothetical protein  TssB
36KO11_08890 (mltA)1893098..1894195 [+], 1098386700274murein transglycosylase A 
37KO11_08895 (csdL)1894272..1895078 [+], 807386700275sulfur acceptor protein CsdL 
38KO11_08900 (csdE)1895129..1895572 [-], 444386700276CsdA-binding activator 
39KO11_08905 (csdA)1895572..1896777 [-], 1206386700277cysteine sulfinate desulfinase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1KO11_088601885630..1886121 [-], 492386700268Hcp-like protein EC042_4529

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Proteins        Genes
N/A
N/A