SecReT6
I. Summary
SecReT6 ID639 insolico
StrainEscherichia coli W
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017664
Location3097972..3133476
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111231111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1WFL_14755 (csdA)3093153..3094358 [+], 1206386710666cysteine sulfinate desulfinase 
2WFL_14760 (csdE)3094358..3094801 [+], 444386710667CsdA-binding activator 
3WFL_14765 (csdL)3094852..3095658 [-], 807386710668sulfur acceptor protein CsdL 
4WFL_14770 (mltA)3095735..3096832 [-], 1098386710669murein transglycosylase A 
5WFL_147753097972..3098472 [+], 501386710670hypothetical protein  TssB
6WFL_147803098531..3100069 [+], 1539386710671hypothetical protein  TssC
7WFL_147853100087..3101424 [+], 1338386710672hypothetical protein  TssK
8WFL_147903101421..3102086 [+], 666386710673type VI secretion system protein ImpK  TssL
9WFL_147953102099..3103751 [+], 1653386710674putative outer membrane lipoprotein  TagL
10WFL_148003103809..3104300 [+], 492386710675Hcp-like protein  TssD
11WFL_148053104491..3107136 [+], 2646386710676ATPase  TssH
12WFL_148103107148..3109634 [+], 2487386710677putative VGR-like protein  TssI
13WFL_148153109636..3110487 [+], 852386710678hypothetical protein 
14WFL_148203110477..3111013 [+], 537386710679hypothetical protein 
15WFL_148253111338..3113845 [+], 2508386710680hypothetical protein  TssI
16WFL_148303114046..3114468 [+], 423386710681hypothetical protein 
17WFL_148353114470..3115021 [+], 552386710682hypothetical protein 
18WFL_148403115099..3116313 [+], 1215386710683hypothetical protein 
19WFL_148453116313..3119702 [+], 3390386710684hypothetical protein  TssM
20WFL_148503119668..3121305 [+], 1638386710685hypothetical protein  TssA
21WFL_148553121311..3122228 [+], 918386710686hypothetical protein  PAAR
22WFL_148603122225..3122623 [+], 399386710687hypothetical protein 
23WFL_148653122678..3122785 [+], 108386710688hypothetical protein 
24WFL_148703123330..3124688 [+], 1359386710689hypothetical protein  TssA
25WFL_148753124694..3125170 [+], 477386710690hypothetical protein  PAAR
26WFL_148803125163..3125909 [-], 747386710691putative IS602 transposase OrfB 
27WFL_148853126029..3126340 [-], 312386710692putative IS602 transposase OrfA 
28WFL_148903126333..3126695 [+], 363386710693hypothetical protein 
29WFL_148953127075..3127269 [+], 195386710694hypothetical protein 
30WFL_149003127269..3127373 [+], 105386710695hypothetical protein 
31WFL_149053127366..3127788 [+], 423386710696hypothetical protein 
32WFL_149103128348..3130108 [+], 1761386710697type VI secretion system protein ImpG  TssF
33WFL_149153130072..3131151 [+], 1080386710698hypothetical protein  TssG
34WFL_149203131132..3131668 [+], 537386710699hypothetical protein  TssJ
35WFL_149253131672..3132100 [+], 429386710700hypothetical protein  TssE
36WFL_149303132100..3133476 [+], 1377386710701hypothetical protein  TssA
37WFL_149353133541..3134089 [+], 549386710702hypothetical protein 
38WFL_14940 (amiC)3134435..3135688 [-], 1254386710703N-acetylmuramoyl-L-alanine amidase 
39WFL_14945 (argA)3135920..3137251 [+], 1332386710704N-acetylglutamate synthase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1WFL_148003103809..3104300 [+], 492386710675Hcp-like protein EC042_4529

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Proteins        Genes
N/A
N/A