SecReT6
I. Summary
SecReT6 ID64 insolico
StrainYersinia pseudotuberculosis IP32953
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_006155
Location3128417..3167344
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPTB2645 (ccmE)3125049..3125543 [-], 49551596964cytochrome c-type biogenesis protein CcmE 
2YPTB2646 (ccmD)3125540..3125890 [-], 35151596965heme exporter protein D 
3YPTB2647 (ccmC)3125887..3126624 [-], 73851596966ABC type heme exporter, permease subunit ccmC 
4YPTB2648 (ccmB)3126687..3127346 [-], 66051596967heme ABC transporter permease subunit CcmB 
5YPTB2649 (ccmA)3127316..3127972 [-], 65751596968cytochrome c biogenesis protein CcmA 
6YPTB26503128417..3128884 [-], 46851596969hypothetical protein 
7YPTB2651 (lemA)3129501..3130043 [+], 54351596970hypothetical protein 
8YPTB26523129988..3132087 [+], 210051596971hypothetical protein 
9YPTB26533132463..3132804 [+], 34251596972hypothetical protein 
10YPTB26543132879..3133244 [-], 36651596973hypothetical protein 
11YPTB26553133251..3133730 [-], 48051596974hypothetical protein  TssE
12YPTB26563133795..3134601 [-], 80751596975hypothetical protein  TagJ
13YPTB26573134621..3135469 [-], 84951596976hypothetical protein 
14YPTB26583135469..3135729 [-], 26151596977hypothetical protein  PAAR
15YPTB26593135809..3138721 [-], 291351596978hypothetical protein  TssI
16YPTB26603139015..3142842 [-], 382851596979hypothetical protein  TssM
17YPTB26613142851..3144227 [-], 137751596980OmpA/MotB family protein  TssL
18YPTB26623144224..3145573 [-], 135051596981hypothetical protein  TssK
19YPTB26633145577..3146137 [-], 56151596982hypothetical protein  TssJ
20YPTB26643146390..3146959 [-], 57051596983hypothetical protein  TssD
21YPTB26653147208..3148710 [-], 150351596984hypothetical protein  TssC
22YPTB26663148734..3149258 [-], 52551596985hypothetical protein  TssB
23YPTB26673149364..3149972 [-], 60951596986fimbrial protein 
24YPTB26683149957..3152668 [-], 271251596987outer membrane fimbrial usher porin 
25YPTB26693152757..3153518 [-], 76251596988pili chaperone protein 
26YPTB26703153675..3154220 [-], 54651596989frimbrial protein 
27YPTB2671 (clpB5)3154431..3157088 [-], 265851596990Clp ATPase  TssH
28YPTB26723157872..3159752 [+], 188151596991hypothetical protein  TssF
29YPTB26733159752..3160777 [+], 102651596992hypothetical protein  TssG
30YPTB26743160876..3162069 [+], 119451596993hypothetical protein  TssA
31YPTB26753162076..3163107 [+], 103251596994fimbrial protein 
32YPTB26763163147..3164484 [+], 133851596995hypothetical protein 
33YPTB26773164481..3165182 [+], 70251596996hypothetical protein 
34YPTB26783165183..3166865 [+], 168351596997OMPA family outer membrane porin  TagL
35YPTB26793166862..3167344 [+], 48351596998hypothetical protein 
36YPTB26803167717..3168319 [-], 60351596999LuxR family transcriptional regulator 
37YPTB2681 (mltB)3169588..3170682 [-], 109551597000murein hydrolase B 
38YPTB2682 (sfuA)3171011..3172030 [+], 102051597001iron(III)-ABC transporter substrate-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPTB26643146390..3146959 [-], 57051596983hypothetical protein ROD_27741

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation