SecReT6
I. Summary
SecReT6 ID640 insolico
StrainProvidencia stuartii MRSN 2154
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017731
Location2033995..2058046
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121112
ComponentTssGTssJTssKTssM
Number1122
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1S70_094852029256..2029552 [-], 297386743269hypothetical protein  PAAR
2S70_094902029603..2030493 [-], 891386743270hypothetical protein 
3S70_094952030730..2030987 [-], 258386743271hypothetical protein  PAAR
4S70_095002031057..2031467 [-], 411386743272hypothetical protein 
5S70_095052031561..2033195 [-], 1635386743273hypothetical protein 
6S70_095102033192..2033998 [-], 807386743274hypothetical protein 
7S70_095152033995..2036142 [-], 2148386743275VgrG-like protein  TssI
8S70_095202036191..2037927 [-], 1737386743276hypothetical protein  TssF
9S70_095252037947..2038426 [-], 480386743277Hcp-like protein  TssD
10S70_095302038439..2039770 [-], 1332386743278hypothetical protein  TssA
11S70_095352039811..2042579 [-], 2769386743279hypothetical protein  TssM
12S70_095402042555..2043358 [-], 804386743280hypothetical protein  TssM
13S70_095452043355..2044818 [-], 1464386743281hypothetical protein  TssA
14S70_095502044824..2045468 [-], 645386743282hypothetical protein 
15S70_095552045465..2046262 [-], 798386743283hypothetical protein 
16S70_095602046259..2048874 [-], 2616386743284ATPase  TssH
17S70_095652048883..2049638 [-], 756386743285putative membrane protein Aec26  TssL
18S70_095702049631..2050785 [-], 1155386743286hypothetical protein  TssK
19S70_095752050835..2050990 [-], 156386743287hypothetical protein  TssK
20S70_095802051042..2051545 [-], 504386743288lipoprotein  TssJ
21S70_095852051547..2052818 [-], 1272386743289phosphopeptide-binding protein  Fha
22S70_095902052824..2053861 [-], 1038386743290hypothetical protein  TssG
23S70_095952053825..2055606 [-], 1782386743291hypothetical protein  TssF
24S70_096002055608..2056045 [-], 438386743292hypothetical protein  TssE
25S70_096052056050..2057528 [-], 1479386743293hypothetical protein  TssC
26S70_096102057549..2058046 [-], 498386743294hypothetical protein  TssB
27S70_096152059186..2061495 [-], 2310386743295glucan 1,4-alpha-glucosidase 
28S70_096202061492..2062934 [-], 1443386743296glucose-6-phosphate 1-dehydrogenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
idrB , ABG57132, ABG57132, idrB, ABG57132, ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1S70_111652396923..2399079 [-], 2157386743596Rhs family protein idrB
2S70_111702399163..2399681 [-], 519386743597hypothetical protein ABG57132
3S70_138452948907..2949425 [-], 519386744116hypothetical protein ABG57132
4S70_147503128043..3130199 [-], 2157386744289Rhs family protein idrB
5S70_147553130283..3130801 [-], 519386744290hypothetical protein ABG57132
6S70_180753801783..3802301 [-], 519386744933hypothetical protein ECA2866

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Proteins        Genes
N/A
N/A