SecReT6
I. Summary
SecReT6 ID645 insolico
StrainBurkholderia pseudomallei 1026b
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_017832
Location221152..243567
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BP1026B_II0184216772..217743 [+], 972386863916quinone oxidoreductase 
2BP1026B_II0185217798..218724 [+], 927386863917dioxygenase 
3BP1026B_II0186218968..219930 [-], 963386863918LysR family regulatory protein 
4BP1026B_II0188 (tssM-3)221152..225228 [-], 4077386863919type VI secretion system  TssM
5BP1026B_II0189 (tssL-3)225257..226537 [-], 1281386863920type VI secretion system  TssL
6BP1026B_II0190 (tssK-3)226611..227957 [-], 1347386863921type VI secretion system  TssK
7BP1026B_II0191 (tssJ-3)227979..228482 [-], 504386863922type VI secretion system  TssJ
8BP1026B_II0192 (hcp-3)228589..229074 [-], 486386863923type VI secretion system  TssD
9BP1026B_II0193 (tssC-3)229191..230690 [-], 1500386863924type VI secretion system  TssC
10BP1026B_II0194 (tssB-3)230725..231306 [-], 582386863925type VI secretion system  TssB
11BP1026B_II0195 (clpV-3)231342..234281 [-], 2940386863926type VI secretion system  TssH
12BP1026B_II0196234510..234812 [-], 303386863927hypothetical protein 
13BP1026B_II0197 (tagK-3)234913..235533 [+], 621386863928type VI secretion system 
14BP1026B_II0198 (tagJ-3)235530..236495 [+], 966386863929type VI secretion system  TagJ
15BP1026B_II0199 (tssE-3)236482..237063 [+], 582386863930type VI secretion system  TssE
16BP1026B_II0201 (tssF-3)237094..238983 [+], 1890386863931type VI secretion system  TssF
17BP1026B_II0200 (tssG-3)238983..240068 [+], 1086386863932type VI secretion system  TssG
18BP1026B_II0202 (tssA-3)240131..241168 [+], 1038386863933type VI secretion system  TssA
19BP1026B_II0203 (vgrG-3)241240..243567 [+], 2328386863934type VI secretion system  TssI
20BP1026B_II0204 (tagAB-3)243599..246076 [+], 2478386863935type VI secretion system 
21BP1026B_II0205 (tagB-3)246073..247155 [+], 1083386863936type VI secretion system 
22BP1026B_II0206 (tagC-3)247337..247996 [+], 660386863937type VI secretion system 
23BP1026B_II0207 (tagD-3)248037..248417 [+], 381386863938type VI secretion system 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A