SecReT6
I. Summary
SecReT6 ID648 insolico
StrainBurkholderia pseudomallei 1026b
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_017832
Location2795826..2819113
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BP1026B_II22502792307..2793029 [-], 723386865911transposase 
2BP1026B_II22522793290..2795170 [-], 1881386865912YD repeat/RHS repeat protein 
3BP1026B_II22532795100..2795768 [-], 669386865913hypothetical protein 
4BP1026B_II2254 (vgrG-6)2795826..2798030 [-], 2205386865914type VI secretion system  TssI
5BP1026B_II2255 (clpV-6)2798027..2800693 [-], 2667386865915type VI secretion system  TssH
6BP1026B_II2256 (tssG-6)2800706..2802118 [-], 1413386865916type VI secretion system  TssG
7BP1026B_II2257 (tssF-6)2802148..2804019 [-], 1872386865917type VI secretion system  TssF
8BP1026B_II2258 (tssE-6)2804024..2804560 [-], 537386865918type VI secretion system  TssE
9BP1026B_II2259 (hcp-6)2804591..2805082 [-], 492386865919type VI secretion system  TssD
10BP1026B_II2260 (tssC-6)2805142..2806650 [-], 1509386865920type VI secretion system  TssC
11BP1026B_II2261 (tssB-6)2806643..2807221 [-], 579386865921type VI secretion system  TssB
12BP1026B_II2262 (tssA-6)2807284..2808363 [-], 1080386865922type VI secretion system  TssA
13BP1026B_II2263 (ppkA-6)2808416..2811025 [-], 2610386865923type VI secretion system 
14BP1026B_II2264 (tagF-6)2811236..2812177 [-], 942386865924type VI secretion system 
15BP1026B_II2265 (tssM-6)2812174..2815803 [-], 3630386865925type VI secretion system  TssM
16BP1026B_II2266 (tssL-6)2815806..2817122 [-], 1317386865926type VI secretion system  TssL
17BP1026B_II2267 (tssK-6)2817138..2818541 [-], 1404386865927type VI secretion system  TssK
18BP1026B_II2268 (tssJ-6)2818538..2819113 [-], 576386865928type VI secretion system  TssJ
19BP1026B_II2269 (tagI-6)2819564..2820097 [+], 534386865929type VI secretion system 
20BP1026B_II2270 (fha-6)2820152..2821588 [+], 1437386865930type VI secretion system  Fha
21BP1026B_II22712821631..2823529 [-], 1899386865931hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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