SecReT6
I. Summary
SecReT6 ID651 insolico
StrainAcinetobacter baumannii MDR-TJ
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017847
Location2480236..2499647
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABTJ_023942475310..2476488 [-], 1179387124405cyanate permease 
2ABTJ_023952476488..2476970 [-], 483387124406cytosine/adenosine deaminase 
3ABTJ_023962476986..2477654 [-], 669387124407ankyrin repeat-containing protein 
4ABTJ_023972477806..2478657 [+], 852387124408transcriptional regulator 
5ABTJ_023982478660..2479613 [-], 954387124409D-alanyl-D-alanine carboxypeptidase 
6ABTJ_023992479621..2480223 [-], 603387124410hypothetical protein 
7ABTJ_024002480236..2481042 [-], 807387124411DotU family type IV / VI secretion system protein  TssL
8ABTJ_024012481060..2482424 [-], 1365387124412type VI secretion protein  TssK
9ABTJ_024022482441..2483535 [-], 1095387124413type VI secretion-associated protein, ImpA family  TssA
10ABTJ_024032483559..2486237 [-], 2679387124414type VI secretion ATPase, ClpV1 family  TssH
11ABTJ_024042486460..2486723 [-], 264387124415hypothetical protein  PAAR
12ABTJ_024052486740..2487507 [-], 768387124416outer membrane protein/peptidoglycan-associated (lipo)protein  TagL
13ABTJ_024062487510..2488505 [-], 996387124417type VI secretion-associated protein 
14ABTJ_024072488507..2492331 [-], 3825387124418type VI secretion protein IcmF  TssM
15ABTJ_024082492362..2493774 [-], 1413387124419hypothetical protein 
16ABTJ_024092493771..2494769 [-], 999387124420type VI secretion protein  TssG
17ABTJ_024102494733..2496544 [-], 1812387124421type VI secretion protein  TssF
18ABTJ_024112496561..2497037 [-], 477387124422type VI secretion system lysozyme-like protein  TssE
19ABTJ_024122497117..2497620 [-], 504387124423type VI secretion system effector  TssD
20ABTJ_024132497670..2499151 [-], 1482387124424type VI secretion protein EvpB  TssC
21ABTJ_024142499144..2499647 [-], 504387124425type VI secretion protein  TssB
22ABTJ_024152499664..2500347 [-], 684387124426hypothetical protein 
23ABTJ_024162501445..2501846 [+], 402387124427hypothetical protein 
24ABTJ_024172501942..2502886 [+], 945387124428nitrate/sulfonate/bicarbonate ABC transporter permease 
25ABTJ_024182502886..2503767 [+], 882387124429nitrate/sulfonate/bicarbonate ABC transporter ATPase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ABTJ_024122497117..2497620 [-], 504387124423type VI secretion system effector A1S_1296

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Proteins        Genes
N/A
N/A