SecReT6
I. Summary
SecReT6 ID653 insolico
StrainEscherichia coli Xuzhou21
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017906
Location243533..288719
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CDCO157_0209 (rnhA)239085..239552 [-], 468387880767ribonuclease H 
2CDCO157_0210239617..240348 [+], 732387880768DNA polymerase III subunit epsilon 
3CDCO157_0210A240886..241686 [+], 801387880769putative aminopeptidase 
4CDCO157_0211241871..242167 [-], 297387880770hypothetical protein 
5CDCO157_0212242164..242613 [-], 450387880771hypothetical protein 
6CDCO157_0213242616..243263 [-], 648387880772hypothetical protein 
7CDCO157_0214243533..244012 [-], 480387880773Hcp-like protein  TssD
8CDCO157_0215243978..245387 [-], 1410387880774hypothetical protein  TssA
9CDCO157_0216245398..248505 [-], 3108387880775IcmF-like protein  TssM
10CDCO157_0219250385..251128 [-], 744387880776hypothetical protein 
11CDCO157_0220251125..253896 [-], 2772387880777putative ATP-dependent Clp proteinase ATP-binding chain  TssH
12CDCO157_0221253905..254666 [-], 762387880778hypothetical protein  TssL
13CDCO157_0222254671..256002 [-], 1332387880779hypothetical protein  TssK
14CDCO157_0223256005..256529 [-], 525387880780lipoprotein  TssJ
15CDCO157_0224256526..257806 [-], 1281387880781hypothetical protein  Fha
16CDCO157_0225257831..258913 [-], 1083387880782hypothetical protein  TssG
17CDCO157_0226258877..260727 [-], 1851387880783hypothetical protein  TssF
18CDCO157_0227260731..261144 [-], 414387880784hypothetical protein  TssE
19CDCO157_0228261235..262626 [-], 1392387880785hypothetical protein  TssC
20CDCO157_0229262677..262901 [-], 225387880786hypothetical protein  TssC
21CDCO157_0230262936..263436 [-], 501387880787hypothetical protein  TssB
22CDCO157_0231264133..264651 [+], 519387880788hypothetical protein  TssD
23CDCO157_0232264684..264821 [+], 138387880789hypothetical protein 
24CDCO157_0233264861..267002 [+], 2142387880790protein VgrG  TssI
25CDCO157_0234267078..271292 [+], 4215387880791RhsG core protein with extension  PAAR
26CDCO157_0235271295..271912 [+], 618387880792hypothetical protein 
27CDCO157_0236271934..272116 [+], 183387880793hypothetical protein 
28CDCO157_0237272260..272550 [+], 291387880794hypothetical protein 
29CDCO157_0238272658..273794 [+], 1137387880795H repeat-containing protein 
30CDCO157_0239273797..275557 [+], 1761387880796Rhs core protein 
31CDCO157_0240275541..275711 [+], 171387880797hypothetical protein 
32CDCO157_0241275759..276022 [+], 264387880798hypothetical protein 
33CDCO157_0242276203..277375 [+], 1173387880799H repeat-containing protein 
34CDCO157_0243277493..278263 [-], 771387880800hypothetical protein 
35CDCO157_0244278417..278890 [+], 474387880801C-lysozyme inhibitor 
36CDCO157_0245 (fadE)278933..281377 [-], 2445387880802acyl-CoA dehydrogenase 
37CDCO157_0246 (gmhA)281617..282195 [+], 579387880803phosphoheptose isomerase 
38CDCO157_0247282300..283067 [+], 768387880804putative amidotransferase 
39CDCO157_0248283038..283778 [-], 741387880805hypothetical protein 
40CDCO157_0249283934..284194 [-], 261387880806hypothetical protein 
41CDCO157_0250284213..284473 [-], 261387880807protein DinJ 
42CDCO157_0251284683..285432 [+], 750387880808putative lipoprotein 
43CDCO157_0252285608..285904 [+], 297387880809hypothetical protein 
44CDCO157_0253286250..287989 [-], 1740387880810FhiA protein 
45CDCO157_0254287934..288719 [+], 786387880811hypothetical protein  TagL
46CDCO157_0255288790..289845 [+], 1056387880812DNA polymerase IV 
47CDCO157_0256289897..290190 [+], 294387880813putative antitoxin of the YafO-YafN toxin-antitoxin system 
48CDCO157_0257290193..290591 [+], 399387880814putative toxin YafO 
49CDCO157_0258290601..291053 [+], 453387880815hypothetical protein 
50CDCO157_0259291360..291626 [+], 267387880816hypothetical protein 
51CDCO157_0260 (prfH)291595..292095 [+], 501387880817peptide chain release factor-like protein 
52CDCO157_0261292152..293609 [-], 1458387880818hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1CDCO157_0231264133..264651 [+], 519387880788hypothetical protein ABG57132

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Proteins        Genes
N/A
N/A