SecReT6
I. Summary
SecReT6 ID657 insolico
StrainPseudomonas fluorescens A506
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017911
Location5794185..5814550
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PflA506_5292 (ppkA)5789840..5792818 [-], 2979387896381serine/threonine protein kinase PpkA  PpkA
2PflA506_5293 (pppA)5792815..5793534 [-], 720387896382serine/threonine phosphoprotein phosphatase PppA  PppA
3PflA506_5294 (tagF)5793535..5794188 [-], 654387896383type VI secretion-associated protein TagF  TagF
4PflA506_5295 (tssM1)5794185..5797685 [-], 3501387896384type VI secretion protein TssM1  TssM
5PflA506_5296 (tssL1)5797682..5798971 [-], 1290387896385type VI secretion protein TssL1  TssL
6PflA506_5297 (tssK1)5798978..5800312 [-], 1335387896386type VI secretion protein TssK1  TssK
7PflA506_5298 (tssJ1)5800331..5800840 [-], 510387896387type VI secretion lipoprotein TssJ1  TssJ
8PflA506_5299 (fha1)5800898..5802226 [-], 1329387896388type VI secretion protein Fha1  Fha
9PflA506_5300 (tssA1)5802620..5803639 [+], 1020387896389type VI secretion protein TssA1  TssA
10PflA506_5301 (tssB1)5803694..5804200 [+], 507387896390type VI secretion protein TssB1  TssB
11PflA506_5302 (tssC1)5804203..5805699 [+], 1497387896391type VI secretion protein TssC1  TssC
12PflA506_5303 (hcp1)5805855..5806343 [+], 489387896392type VI secretion system effector Hcp1  TssD
13PflA506_5304 (tssE1)5806416..5806931 [+], 516387896393type VI secretion protein TssE1  TssE
14PflA506_5305 (tssF1)5806928..5808787 [+], 1860387896394type VI secretion protein TssF1  TssF
15PflA506_5306 (tssG1)5808751..5809794 [+], 1044387896395type VI secretion protein TssG1  TssG
16PflA506_5307 (clpV1)5809787..5812447 [+], 2661387896396type VI secretion ATPase ClpV1  TssH
17PflA506_5308 (vgrG1)5812604..5814550 [+], 1947387896397type VI secretion protein VgrG1  TssI
18PflA506_53095814566..5815000 [+], 435387896398hypothetical protein 
19PflA506_53105815015..5819397 [+], 4383387896399Rhs family protein  PAAR
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0085 , PA0091

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PflA506_5303(hcp1)5805855..5806343 [+], 489387896392type VI secretion system effector Hcp1 PA0085
2PflA506_5308(vgrG1)5812604..5814550 [+], 1947387896397type VI secretion protein VgrG1 PA0091

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Proteins        Genes
N/A
N/A