SecReT6
I. Summary
SecReT6 ID658 insolico
StrainBurkholderia sp. KJ006
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_017920
Location405723..436609
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1MYA_0377400837..400977 [+], 141387901137hypothetical protein 
2MYA_0378401005..401820 [-], 816387901138hypothetical protein 
3MYA_0379401994..402110 [-], 117387901139hypothetical protein 
4MYA_0380404067..404246 [+], 180387901140hypothetical protein 
5MYA_0381404307..404435 [-], 129387901141hypothetical protein 
6MYA_0382404608..405408 [-], 801387901142amino acid ABC transporter substrate-binding protein 
7MYA_0383405723..408902 [+], 3180387901143VgrG protein  TssI
8MYA_0384408953..413515 [+], 4563387901144Rhs family protein 
9MYA_0385414015..415295 [+], 1281387901145transposase 
10MYA_0386415495..415812 [+], 318387901146hypothetical protein 
11MYA_0387415905..416687 [-], 783387901147transmembrane protein  TssL
12MYA_0388416684..418030 [-], 1347387901148type VI secretion protein, VC_A0114 family  TssK
13MYA_0389418133..418744 [-], 612387901149type VI secretion lipoprotein/VasD  TssJ
14MYA_0390419155..419754 [+], 600387901150hypothetical protein 
15MYA_0391419809..420324 [+], 516387901151type VI secretion protein  TssB
16MYA_0392420340..421830 [+], 1491387901152type VI secretion protein, EvpB/VC_A0108 family  TssC
17MYA_0393421937..422404 [+], 468387901153hypothetical protein  TssD
18MYA_0394422467..422952 [+], 486387901154type VI secretion system lysozyme-related protein  TssE
19MYA_0395423030..424865 [+], 1836387901155type VI secretion protein, VC_A0110 family  TssF
20MYA_0396424829..425929 [+], 1101387901156type VI secretion protein, VC_A0111 family  TssG
21MYA_0397425968..428640 [+], 2673387901157ClpB protein  TssH
22MYA_0398428680..429801 [+], 1122387901158type VI secretion-associated protein, ImpA family  TssA
23MYA_0399430001..430576 [-], 576387901159hypothetical protein 
24MYA_0400430573..430701 [-], 129387901160hypothetical protein 
25MYA_0401430718..431677 [-], 960387901161Outer membrane lipoprotein omp16  TagL
26MYA_0402431682..432671 [-], 990387901162hypothetical protein 
27MYA_0403432668..436609 [-], 3942387901163transmembrane protein  TssM
28MYA_0404436911..437756 [-], 846387901164transmembrane protein 
29MYA_0405437878..438846 [+], 969387901165Tail fiber protein 
30MYA_0406439026..440054 [+], 1029387901166Mg2+ and Co2+ transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1MYA_0393421937..422404 [+], 468387901153hypothetical protein BCAL0343

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Proteins        Genes
N/A
N/A