SecReT6
I. Summary
SecReT6 ID659 insolico
StrainBurkholderia sp. KJ006
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_017921
Location1231083..1249121
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1MYA_40671227411..1227893 [+], 4833879048183-phenylpropionate dioxygenase beta subunit 
2MYA_40681227933..1229630 [+], 1698387904819tryptophan 2-monooxygenase 
3MYA_40691229645..1230370 [-], 726387904820glutathione S-transferase 
4MYA_40701230777..1230890 [-], 114387904821hypothetical protein 
5MYA_40711231083..1231514 [-], 432387904822hypothetical protein  TssE
6MYA_40721231527..1232012 [-], 486387904823hypothetical protein  TssL
7MYA_40731232186..1233493 [-], 1308387904824hypothetical protein  TssK
8MYA_40741233587..1234909 [-], 1323387904825hypothetical protein  TssC
9MYA_40751235364..1237745 [+], 2382387904826Rhs element Vgr protein  TssI
10MYA_40761237758..1239911 [+], 2154387904827flagellar hook-length control protein FliK 
11MYA_40771241960..1245523 [+], 3564387904828hypothetical protein  TssM
12MYA_40781245540..1247354 [+], 1815387904829hypothetical protein  TssF
13MYA_40791247420..1248433 [+], 1014387904830hypothetical protein  TssG
14MYA_40801248480..1249121 [+], 642387904831hypothetical protein  TssJ
15MYA_40811249831..1251309 [+], 1479387904832diguanylate cyclase 
16MYA_40821251379..1251711 [+], 333387904833cupin 
17MYA_40831251801..1252721 [-], 921387904834esterase 
18MYA_40841252783..1253886 [-], 1104387904835OpgC protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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