SecReT6
I. Summary
SecReT6 ID660 insolico
StrainBurkholderia sp. KJ006
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_017921
Location1951861..1970183
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1MYA_47111947637..1948410 [+], 774387905457ISPsy4, transposition helper protein 
2MYA_47131951861..1952511 [-], 651387905458type VI secretion lipoprotein/VasD  TssJ
3MYA_47141952558..1953574 [-], 1017387905459type VI secretion protein ImpH/VasB  TssG
4MYA_47151953637..1955451 [-], 1815387905460type VI secretion protein ImpG/VasA  TssF
5MYA_47161955468..1958524 [-], 3057387905461hypothetical protein  TssM
6MYA_47171958813..1958965 [+], 153387905462hypothetical protein 
7MYA_47181960314..1962290 [-], 1977387905463transmembrane protein 
8MYA_47191963582..1965897 [-], 2316387905464VgrG protein  TssI
9MYA_47201965886..1966089 [+], 204387905465hypothetical protein 
10MYA_47211966355..1967677 [+], 1323387905466type VI secretion protein ImpC/EvpB  TssC
11MYA_47221967674..1969080 [+], 1407387905467type VI secretion protein ImpJ/VasE  TssK
12MYA_47231969254..1969739 [+], 486387905468hypothetical protein  TssL
13MYA_47241969812..1970183 [+], 372387905469type VI secretion system lysozyme-related protein  TssE
14MYA_47251970202..1970324 [-], 123387905470hypothetical protein 
15MYA_47261970421..1971608 [-], 1188387905471Outer membrane porin protein 32 
16MYA_47271972367..1973731 [-], 1365387905472Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase 
17MYA_47281973776..1974543 [-], 768387905473Histidine ABC transporter, permease protein HisM 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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