SecReT6
I. Summary
SecReT6 ID662 insolico
StrainCronobacter sakazakii ES15
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017933
Location2323831..2344935
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011301101
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ES15_21802319258..2320010 [-], 753389841180hypothetical protein 
2ES15_21812320219..2320935 [-], 717389841181hypothetical protein 
3ES15_21822321760..2322128 [-], 369389841182hypothetical protein 
4ES15_21832322825..2323826 [-], 1002389841183hypothetical protein 
5ES15_21842323831..2326245 [-], 2415389841184hypothetical protein  TssI
6ES15_2185 (vasD1)2326303..2326824 [-], 522389841185type VI secretion system core protein VasD  TssJ
7ES15_2186 (vasB)2326850..2327932 [-], 1083389841186type VI secretion system core protein VasB  TssG
8ES15_2187 (vasA)2327896..2329665 [-], 1770389841187type VI secretion system core protein VasA  TssF
9ES15_2188 (vasK)2329847..2333245 [-], 3399389841188type VI secretion system core protein VasK  TssM
10ES15_21892333238..2334446 [-], 1209389841189hypothetical protein 
11ES15_21902334956..2335240 [-], 285389841190hypothetical protein  TssI
12ES15_21912335353..2336045 [-], 693389841191hypothetical protein 
13ES15_21922336059..2338419 [-], 2361389841192Rhs element Vgr protein  TssI
14ES15_2193 (hcp1)2338646..2339137 [-], 492389841193Type VI secretion system effector, Hcp1 family 1  TssD
15ES15_21942339152..2340813 [-], 1662389841194hypothetical protein  TagL
16ES15_2195 (vasF)2340815..2341501 [-], 687389841195type VI secretion system-associated protein  TssL
17ES15_2196 (vasE)2341498..2342847 [-], 1350389841196type VI secretion system core protein  TssK
18ES15_2197 (impC1)2342862..2344403 [-], 1542389841197type VI secretion protein  TssC
19ES15_2198 (impB1)2344438..2344935 [-], 498389841198type VI secretion protein  TssB
20ES15_21992345181..2345369 [-], 189389841199hypothetical protein 
21ES15_22002345476..2345766 [-], 291389841200hypothetical protein 
22ES15_22012345855..2346415 [+], 561389841201hypothetical protein 
23ES15_2202 (betT)2346509..2348539 [-], 2031389841202choline transport protein BetT 
24ES15_2203 (betI)2348792..2349400 [+], 609389841203transcriptional regulator BetI 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ES15_2193(hcp1)2338646..2339137 [-], 492389841193Type VI secretion system effector, Hcp1 family 1 EC042_4529

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Proteins        Genes
N/A
N/A