SecReT6
I. Summary
SecReT6 ID663 insolico
StrainCronobacter sakazakii ES15
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017933
Location3020873..3052897
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1113
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ES15_28023016212..3016925 [-], 714389841802N-acetyltransferase GCN5 
2ES15_28033017063..3018223 [+], 1161389841803carboxylate-amine ligase 
3ES15_28043018488..3020395 [+], 1908389841804methyl-accepting chemotaxis protein 
4ES15_28053020873..3021355 [-], 483389841805hypothetical protein  TssE
5ES15_2806 (impE1)3021365..3022162 [-], 798389841806ImpE family protein  TagJ
6ES15_28073022180..3022968 [-], 789389841807hypothetical protein 
7ES15_28083022974..3023234 [-], 261389841808hypothetical protein  PAAR
8ES15_28093023290..3025725 [-], 2436389841809hypothetical protein  TssI
9ES15_28103025765..3026313 [-], 549389841810hypothetical protein 
10ES15_2811 (icmF)3026434..3027783 [-], 1350389841811IcmF family protein  TssM
11ES15_28123027813..3028472 [-], 660389841812hypothetical protein  TssM
12ES15_2813 (imcF)3028469..3030208 [-], 1740389841813ImcF family protein  TssM
13ES15_2814 (impK1)3030220..3031563 [-], 1344389841814OmpA/MotB family protein 1  TssL
14ES15_2815 (impJ1)3031563..3032909 [-], 1347389841815type VI secretion protein  TssK
15ES15_2816 (vasD2)3032896..3033303 [-], 408389841816type VI secretion lipoprotein, VC_A0113 family 1  TssJ
16ES15_2817 (hcp2)3033608..3034093 [-], 486389841817type VI secretion system effector, Hcp1 family 2  TssD
17ES15_2818 (impC2)3034252..3035748 [-], 1497389841818type VI secretion protein EvpB  TssC
18ES15_28193035771..3036301 [-], 531389841819type VI secretion protein  TssB
19ES15_28203036391..3036552 [-], 162389841820fimbrial protein, truncated 
20ES15_28213036583..3036714 [+], 132389841821fimbrial protein, truncated 
21ES15_2822 (fimD3)3036972..3039572 [-], 2601389841822fimbrial biogenesis outer membrane usher protein 
22ES15_28233039660..3040130 [-], 471389841823Gram-negative pili assembly chaperone 
23ES15_2824 (fimA2)3040505..3041035 [-], 531389841824frimbrial protein 
24ES15_2825 (clpB2)3041099..3043792 [-], 2694389841825Clp ATPase chaperone protein ClpB  TssH
25ES15_2826 (impG)3044323..3046203 [+], 1881389841826type VI secretion protein  TssF
26ES15_2827 (impH1)3046203..3047231 [+], 1029389841827type VI secretion protein  TssG
27ES15_2828 (impA1)3047286..3048332 [+], 1047389841828ImpA family protein  TssA
28ES15_28293048337..3049332 [+], 996389841829fimbrial protein 
29ES15_28303049344..3050681 [+], 1338389841830hypothetical protein 
30ES15_28313050675..3051274 [+], 600389841831hypothetical protein 
31ES15_2832 (ompA2)3051338..3052897 [+], 1560389841832OmpA/MotB family protein 2  TagL
32ES15_28333052890..3053375 [+], 486389841833hypothetical protein 
33ES15_28343053439..3054392 [-], 954389841834MarR family transcriptional regulator with acetyltransferase activity 
34ES15_2835 (ygaP)3054459..3054995 [-], 537389841835Inner membrane protein YgaP 
35ES15_28363054997..3055302 [-], 306389841836ArsR family transcriptional regulator 
36ES15_28373055508..3056701 [+], 1194389841837major facilitator superfamily protein 
37ES15_28383056811..3057164 [+], 354389841838hypothetical protein 
38ES15_28393057169..3057648 [-], 480389841839RES domain-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Hcp

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ES15_2817(hcp2)3033608..3034093 [-], 486389841817type VI secretion system effector, Hcp1 family 2 Hcp

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Proteins        Genes
N/A
N/A