SecReT6
I. Summary
SecReT6 ID664 insolico
StrainCronobacter sakazakii ES15
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017933
Location4157649..4205735
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ES15_38064152686..4157218 [-], 4533389842806hypothetical protein  PAAR
2ES15_38074157221..4157652 [-], 432389842807hypothetical protein 
3ES15_38084157649..4159580 [-], 1932389842808type VI secretion system Vgr family protein  TssI
4ES15_38094159851..4160015 [-], 165389842809hypothetical protein 
5ES15_38104160281..4160799 [-], 519389842810hypothetical protein 
6ES15_38114160974..4161396 [-], 423389842811hypothetical protein 
7ES15_38124161409..4161771 [-], 363389842812hypothetical protein 
8ES15_38134162031..4162423 [-], 393389842813hypothetical protein 
9ES15_38144162429..4163034 [-], 606389842814hypothetical protein 
10ES15_38154163044..4164114 [-], 1071389842815pentapeptide repeat protein 
11ES15_38164164111..4166651 [-], 2541389842816hypothetical protein 
12ES15_38174166799..4167164 [-], 366389842817hypothetical protein 
13ES15_38184167562..4167933 [-], 372389842818hypothetical protein 
14ES15_38194168535..4168900 [-], 366389842819hypothetical protein 
15ES15_38204169002..4169364 [-], 363389842820hypothetical protein 
16ES15_38214169390..4169560 [-], 171389842821hypothetical protein 
17ES15_38224169743..4171995 [-], 2253389842822Rhs element Vgr protein  TssI
18ES15_38234172311..4173411 [-], 1101389842823hypothetical protein 
19ES15_38244173414..4173848 [-], 435389842824hypothetical protein 
20ES15_38254173870..4174964 [-], 1095389842825hypothetical protein  PAAR
21ES15_38264174987..4176948 [-], 1962389842826type VI secretion system effector protein VgrG  TssI
22ES15_38274177089..4177850 [-], 762389842827hypothetical protein 
23ES15_38284177847..4179277 [-], 1431389842828hypothetical protein 
24ES15_38294179402..4180835 [-], 1434389842829serine/threonine protein kinase 
25ES15_3830 (clpV)4180866..4183481 [-], 2616389842830protein clpV  TssH
26ES15_38314183528..4183845 [-], 318389842831hypothetical protein 
27ES15_3832 (impH2)4183918..4184961 [-], 1044389842832type VI secretion system protein ImpH  TssG
28ES15_38334184958..4186829 [-], 1872389842833hypothetical protein  TssF
29ES15_3834 (impF)4186832..4187404 [-], 573389842834type VI secretion system protein ImpF  TssE
30ES15_3835 (impE2)4187397..4188230 [-], 834389842835type VI secretion system protein ImpE  TagJ
31ES15_38364188256..4189260 [-], 1005389842836hypothetical protein 
32ES15_38374189279..4190073 [-], 795389842837protein serine/threonine phosphatase 
33ES15_38384190070..4191986 [-], 1917389842838type VI secretion system FHA domain-containing protein  Fha
34ES15_38394192242..4192625 [-], 384389842839hypothetical protein 
35ES15_38404192646..4193014 [-], 369389842840hypothetical protein 
36ES15_3841 (hcp3)4193062..4193544 [-], 483389842841Hcp1 family type VI secretion system effector  TssD
37ES15_38424193749..4194147 [-], 399389842842hypothetical protein 
38ES15_38434194197..4194631 [-], 435389842843hypothetical protein 
39ES15_38444194638..4195057 [-], 420389842844hypothetical protein 
40ES15_3845 (impC3)4195124..4196623 [-], 1500389842845type VI secretion system protein ImpC  TssC
41ES15_3846 (impB2)4196627..4197151 [-], 525389842846type VI secretion system protein ImpB  TssB
42ES15_3847 (impA2)4197227..4198249 [-], 1023389842847type VI secretion system protein ImpA  TssA
43ES15_3848 (impM)4198259..4198969 [-], 711389842848type VI secretion system protein ImpM 
44ES15_3849 (impL)4198986..4202606 [-], 3621389842849type VI secretion system protein ImpL  TssM
45ES15_3850 (impK2)4202608..4203843 [-], 1236389842850OmpA family protein  TssL
46ES15_3851 (impJ2)4203861..4205204 [-], 1344389842851type VI secretion system protein ImpJ  TssK
47ES15_3852 (vasD3)4205229..4205735 [-], 507389842852type VI secretion lipoprotein, VC_A0113 family 2  TssJ
48ES15_38534205760..4206254 [-], 495389842853hypothetical protein 
49ES15_38544207650..4208102 [+], 453389842854hypothetical protein 
50ES15_3855 (emrD)4208314..4209492 [+], 1179389842855multidrug resistance protein D 
51ES15_38564209395..4210492 [-], 1098389842856hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ES15_3841(hcp3)4193062..4193544 [-], 483389842841Hcp1 family type VI secretion system effector SMA2263

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Proteins        Genes
N/A
N/A