SecReT6
I. Summary
SecReT6 ID665 insolico
StrainTistrella mobilis KA081020-065
Repliconplasmid pTM1 [Browse all T6SS(s) in this replicon]
AccessionNC_017957
Location66195..103272
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1TMO_a006361816..62520 [-], 705389875315hypothetical protein 
2TMO_a006462658..63257 [-], 600389875316hypothetical protein 
3TMO_a006563254..63988 [-], 735389875317hypothetical protein 
4TMO_a006664061..65137 [-], 1077389875318hypothetical protein 
5TMO_a006765134..66168 [-], 1035389875319hypothetical protein 
6TMO_a006866195..68924 [-], 2730389875320vgrG protein  TssI
7TMO_a006969058..69570 [-], 513389875321hypothetical protein 
8TMO_a007069567..71219 [-], 1653389875322hypothetical protein 
9TMO_a007171212..72438 [-], 1227389875323ABC transporter, permease protein 
10TMO_a0072 (macB)72438..73142 [-], 705389875324Macrolide export ATP-binding/permease protein  TagT
11TMO_a007373139..75115 [-], 1977389875325ppkA-related protein 
12TMO_a007475115..76542 [-], 1428389875326serine/threonine kinase 
13TMO_a0075 (prpC)76535..77305 [-], 771389875327Ser/Thr protein phosphatase 
14TMO_a007677302..78018 [-], 717389875328hypothetical protein 
15TMO_a007778000..81725 [-], 3726389875329hypothetical protein  TssM
16TMO_a007881725..83263 [-], 1539389875330hypothetical protein  TssL
17TMO_a007983267..84610 [-], 1344389875331hypothetical protein  TssK
18TMO_a008084669..85178 [-], 510389875332type VI secretion lipoprotein, VC_A0113 family  TssJ
19TMO_a008185211..86617 [-], 1407389875333FHA domain-containing protein  Fha
20TMO_a008286661..89264 [-], 2604389875334type VI secretion ATPase, ClpV1 family  TssH
21TMO_a008389334..90365 [-], 1032389875335type VI secretion system protein ImpH  TssG
22TMO_a008490375..92216 [-], 1842389875336type VI secretion system protein ImpG  TssF
23TMO_a008592213..92731 [-], 519389875337type VI secretion system protein ImpF  TssE
24TMO_a008692728..93597 [-], 870389875338type VI secretion system protein ImpE  TagJ
25TMO_a008793663..95063 [-], 1401389875339type VI secretion system protein ImpC  TssC
26TMO_a008895080..96576 [-], 1497389875340type VI secretion system protein ImpC  TssC
27TMO_a008996582..97115 [-], 534389875341type VI secretion protein  TssB
28TMO_a009097175..98317 [-], 1143389875342impA-related N-terminal protein  TssA
29TMO_a009198634..99083 [-], 450389875343peptidase S1 and S6, chymotrypsin/Hap 
30TMO_a009299418..99891 [+], 474389875344hypothetical protein  TssD
31TMO_a0093100070..100681 [+], 612389875345hypothetical protein 
32TMO_a0094100695..101285 [+], 591389875346hypothetical protein 
33TMO_a0095101290..103272 [+], 1983389875347VgrG protein  TssI
34TMO_a0096103322..104083 [+], 762389875348hypothetical protein 
35TMO_a0097104130..104543 [+], 414389875349hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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