SecReT6
I. Summary
SecReT6 ID666 insolico
StrainAdvenella kashmirensis WT001
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017964
Location4052652..4059906
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010011111
ComponentTssGTssJTssKTssM
Number0000
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1TKWG_235204047989..4048777 [+], 789389873860hypothetical protein 
2TKWG_235254048936..4050177 [+], 1242389873861multidrug resistance protein 
3TKWG_235304050342..4051835 [+], 1494389873862drug efflux transporter 
4TKWG_235354051880..4052530 [-], 651389873863hypothetical protein 
5TKWG_235404052652..4054493 [-], 1842389873864hypothetical protein  TssF
6TKWG_235454054493..4055047 [-], 555389873865hypothetical protein  TssE
7TKWG_235504055111..4055932 [-], 822389873866hypothetical protein  TagJ
8TKWG_235554056047..4056532 [-], 486389873867hypothetical protein  TssD
9TKWG_235604056721..4058217 [-], 1497389873868hypothetical protein  TssC
10TKWG_235654058231..4058785 [-], 555389873869hypothetical protein  TssB
11TKWG_235704058857..4059906 [-], 1050389873870protein ImpA  TssA
12TKWG_235754060278..4061576 [-], 1299389873871hypothetical protein 
13TKWG_235804061660..4062169 [-], 510389873872tripartite ATP-independent periplasmic transporter subunit DctQ family protein 5 
14TKWG_235854062166..4063140 [-], 975389873873hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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