SecReT6
I. Summary
SecReT6 ID667 insolico
StrainPseudomonas putida ND6
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017986
Location150200..187494
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YSA_00285145583..147349 [+], 1767395443789iron-sulfur cluster-binding protein 
2YSA_00286147476..147868 [+], 393395443790acetyltransferase 
3YSA_00289147915..148427 [-], 513395443791AmiS/UreI transporter 
4YSA_00291148440..149024 [-], 585395443792response regulator receiver/ANTAR domain-containing protein 
5YSA_00292149021..150181 [-], 1161395443793branched-chain amino acid ABC transporter periplasmic component-like protein 
6YSA_00294150200..151321 [-], 1122395443794ATPase  TssH
7YSA_00295151377..152420 [-], 1044395443795acylamide amidohydrolase 
8YSA_00296152412..152546 [+], 135395443796hypothetical protein 
9YSA_00297152606..153472 [-], 867395443797dihydrodipicolinate synthase 
10YSA_00298153471..153599 [+], 129395443798hypothetical protein 
11YSA_00302153810..157328 [-], 3519395443799cellulose synthase subunit BcsC 
12YSA_00304157316..158434 [-], 1119395443800endo-1,4-D-glucanase 
13YSA_00305158431..160719 [-], 2289395443801Cyclic di-GMP-binding protein 
14YSA_00308160716..163253 [-], 2538395443802cellulose synthase catalytic subunit 
15YSA_00309163336..164043 [-], 708395443803cellulose synthase 
16YSA_00312164040..164258 [-], 219395443804hypothetical protein 
17YSA_00313164255..165868 [-], 1614395443805hypothetical protein 
18YSA_00314165861..166046 [-], 186395443806hypothetical protein 
19YSA_00316166043..167419 [-], 1377395443807hypothetical protein 
20YSA_00315167483..167611 [+], 129395443808hypothetical protein 
21YSA_00317167593..167706 [+], 114395443809hypothetical protein 
22YSA_00320167713..169689 [+], 1977395443810ABC transporter ATP-binding protein  TagT
23YSA_00322169767..173387 [-], 3621395443811ImcF domain-containing protein  TssM
24YSA_00323173384..174841 [-], 1458395443812ImpA domain-containing protein  TssA
25YSA_00324174835..175392 [-], 558395443813hypothetical protein 
26YSA_00325175513..175692 [+], 180395443814hypothetical protein 
27YSA_00327175812..176315 [+], 504395443815hypothetical protein  TssB
28YSA_00331176333..177823 [+], 1491395443816hypothetical protein  TssC
29YSA_00332177820..178230 [+], 411395443817GPW/gp25 family protein  TssE
30YSA_00335178234..180000 [+], 1767395443818hypothetical protein  TssF
31YSA_00336180045..180980 [+], 936395443819hypothetical protein  TssG
32YSA_00338180977..181546 [+], 570395443820FHA domain-containing protein  Fha
33YSA_00340181543..182340 [+], 798395443821hypothetical protein  TssJ
34YSA_00341182396..183733 [+], 1338395443822hypothetical protein  TssK
35YSA_00343183735..184604 [+], 870395443823hypothetical protein  TssL
36YSA_00345184631..184738 [-], 108395443824hypothetical protein 
37YSA_00347184737..185252 [+], 516395443825hypothetical protein  TssD
38YSA_00348185326..187494 [+], 2169395443826Rhs element Vgr protein  TssI
39YSA_00352187491..188414 [+], 924395443827hypothetical protein 
40YSA_00353188476..190542 [+], 2067395443828hypothetical protein 
41YSA_00356190613..191395 [+], 783395443829hypothetical protein 
42YSA_00358191398..192291 [+], 894395443830hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YSA_00347184737..185252 [+], 516395443825hypothetical protein ECA2866

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Proteins        Genes
N/A
N/A