SecReT6
I. Summary
SecReT6 ID668 insolico
StrainPseudomonas putida ND6
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017986
Location5580570..5605186
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YSA_104445576152..5577696 [-], 1545395449294major facilitator transporter 
2YSA_104455577886..5580402 [-], 2517395449295excinuclease ABC subunit A 
3YSA_104465580570..5581655 [-], 1086395449296ImpA domain-containing protein  TssA
4YSA_104495581751..5582293 [-], 543395449297hypothetical protein  TssD
5YSA_104505582413..5584908 [-], 2496395449298OmpA/MotB domain-containing protein  TssM
6YSA_104525584905..5585813 [-], 909395449299hypothetical protein 
7YSA_104555585810..5589613 [-], 3804395449300ImcF domain-containing protein  TssM
8YSA_104575589644..5590360 [-], 717395449301hypothetical protein  TssL
9YSA_104595590357..5591700 [-], 1344395449302hypothetical protein  TssK
10YSA_104615591697..5592419 [-], 723395449303hypothetical protein  TssJ
11YSA_104635592444..5595041 [-], 2598395449304ATPase  TssH
12YSA_104645595038..5596024 [-], 987395449305hypothetical protein  TssG
13YSA_104665596072..5597892 [-], 1821395449306hypothetical protein  TssF
14YSA_104675597892..5598374 [-], 483395449307hypothetical protein  TssE
15YSA_104695598401..5599903 [-], 1503395449308hypothetical protein  TssC
16YSA_104715599918..5600493 [-], 576395449309hypothetical protein  TssB
17YSA_104745600522..5601286 [-], 765395449310hypothetical protein 
18YSA_104755601512..5601718 [+], 207395449311hypothetical protein 
19YSA_104795601865..5602416 [-], 552395449312hypothetical protein 
20YSA_104825602541..5602696 [+], 156395449313ADP-ribosyl- hydrolase 
21YSA_104855602742..5605186 [+], 2445395449314Rhs element Vgr protein  TssI
22YSA_104875605197..5605781 [+], 585395449315hypothetical protein 
23YSA_104885605816..5606283 [+], 468395449316hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Psyr_4965

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YSA_104495581751..5582293 [-], 543395449297hypothetical protein Psyr_4965

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Proteins        Genes
N/A
N/A