SecReT6
I. Summary
SecReT6 ID669 insolico
StrainSinorhizobium fredii USDA 257
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018000
Location2981696..3014878
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1USDA257_c284202978615..2979133 [-], 519398352706hypothetical protein 
2USDA257_c284302979167..2981308 [-], 2142398352707hypothetical protein 
3USDA257_c284402981696..2984002 [+], 2307398352708hypothetical protein  TssI
4USDA257_c284502984015..2984440 [+], 426398352709hypothetical protein  TssI
5USDA257_c284602984440..2984787 [+], 348398352710hypothetical protein 
6USDA257_c284702984796..2985851 [-], 1056398352711hypothetical protein 
7USDA257_c284802985867..2986841 [-], 975398352712hypothetical protein 
8USDA257_c284902986838..2987875 [-], 1038398352713hypothetical protein 
9USDA257_c285002987872..2988972 [-], 1101398352714hypothetical protein 
10USDA257_c285102988972..2989517 [-], 546398352715hypothetical protein 
11USDA257_c285202989499..2993029 [-], 3531398352716hypothetical protein  TssM
12USDA257_c285302993031..2994350 [-], 1320398352717hypothetical protein  TssL
13USDA257_c285402994355..2995689 [-], 1335398352718hypothetical protein  TssK
14USDA257_c285502995706..2996164 [-], 459398352719hypothetical protein  TssJ
15USDA257_c285602996164..2997411 [-], 1248398352720hypothetical protein  Fha
16USDA257_c285702997405..2998472 [-], 1068398352721hypothetical protein  TssG
17USDA257_c285802998436..3000310 [-], 1875398352722hypothetical protein  TssF
18USDA257_c285903000312..3001079 [-], 768398352723hypothetical protein  TssE
19USDA257_c286003001060..3001509 [-], 450398352724hypothetical protein  TssD
20USDA257_c286103001539..3003047 [-], 1509398352725hypothetical protein  TssC
21USDA257_c286203003051..3003587 [-], 537398352726hypothetical protein  TssB
22USDA257_c286303003591..3004739 [-], 1149398352727hypothetical protein  TssA
23USDA257_c28640 (sps)3004819..3006936 [-], 2118398352728serine/threonine-protein kinase Sps 
24USDA257_c28650 (clpV)3007099..3009831 [+], 2733398352729protein ClpV  TssH
25USDA257_c286603009864..3010610 [-], 747398352730hypothetical protein  TagL
26USDA257_c28670 (prpC)3010729..3011499 [+], 771398352731protein phosphatase PrpC 
27USDA257_c286803011496..3012380 [+], 885398352732hypothetical protein 
28USDA257_c286903012413..3014878 [+], 2466398352733hypothetical protein  TssM
29USDA257_c287003014980..3015456 [-], 477398352734mucR family transcriptional regulatory protein y4pD 
30USDA257_c28710 (kpsM1)3015996..3016772 [+], 777398352735polysialic acid transport protein KpsM 
31USDA257_c28720 (lpsZ1)3016776..3017864 [-], 1089398352736lipopolysaccharide-processing protein LpsZ 
32USDA257_c287303018111..3019877 [+], 1767398352737cps10D: Cps10D 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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