SecReT6
I. Summary
SecReT6 ID67 insolico
StrainBurkholderia mallei ATCC 23344
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_006348
Location2913417..2924470
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100010000
ComponentTssGTssJTssKTssM
Number1001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA28222909562..2911001 [+], 144053723964TolC family type I secretion outer membrane protein 
2BMA28232911146..2912183 [+], 103853723965hypothetical protein 
3BMA28242912180..2913145 [+], 96653723966hypothetical protein 
4BMA28252913163..2913441 [+], 27953723967hypothetical protein 
5BMA28262913417..2917310 [+], 389453723968hypothetical protein  TssM
6BMA28282918301..2919233 [+], 93353723969OmpA domain-containing protein  TagL
7BMA28292919432..2920553 [-], 112253724297hypothetical protein  TssA
8BMA28302920643..2923336 [-], 269453724298ClpA/B type protease  TssH
9BMA28312923370..2924470 [-], 110153724299hypothetical protein  TssG
10BMA28342926973..2927806 [-], 83453724300IS407A, transposase OrfB 
11BMA28352927830..2928093 [-], 26453726335IS407A, transposase OrfA 
12BMA28362928159..2929142 [-], 984537243012-nitropropane dioxygenase 
13BMA28372929157..2929273 [+], 11753724302hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BTH_I2705

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BMA0855893967..896774 [+], 280853725110Rhs element Vgr protein BTH_I2705

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Proteins        Genes
N/A
N/A