SecReT6
I. Summary
SecReT6 ID670 insolico
StrainThiocystis violascens DSM 198
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018012
Location2491497..2517283
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Thivi_22792487876..2488139 [+], 264390950592ferredoxin 
2Thivi_22802488313..2490037 [-], 1725390950593NhaP-type Na+(K+)/H+ antiporter 
3Thivi_22812490078..2490392 [-], 315390950594hypothetical protein 
4Thivi_22822490899..2491441 [-], 543390950595hypothetical protein 
5Thivi_22832491497..2494250 [-], 2754390950596type VI secretion ATPase, ClpV1 family  TssH
6Thivi_22842494469..2495503 [-], 1035390950597type VI secretion protein  TssG
7Thivi_22852495467..2497368 [-], 1902390950598type VI secretion protein  TssF
8Thivi_22862497370..2497930 [-], 561390950599type VI secretion system lysozyme-like protein  TssE
9Thivi_22872497875..2498690 [-], 816390950600protein of avirulence locus involved in temperature-dependent protein secretion  TagJ
10Thivi_22882498797..2499285 [-], 489390950601hemolysin-coregulated protein  TssD
11Thivi_22892499396..2500895 [-], 1500390950602type VI secretion protein EvpB  TssC
12Thivi_22902500899..2501429 [-], 531390950603type VI secretion protein  TssB
13Thivi_22912501460..2502521 [-], 1062390950604type VI secretion-associated protein, ImpA family  TssA
14Thivi_22922502657..2503136 [-], 480390950605hypothetical protein 
15Thivi_22932503157..2504629 [-], 1473390950606hypothetical protein 
16Thivi_22942504631..2505452 [-], 822390950607hypothetical protein 
17Thivi_22952505493..2505882 [-], 390390950608hypothetical protein 
18Thivi_22962505892..2506440 [-], 549390950609hypothetical protein 
19Thivi_22972506519..2508669 [-], 2151390950610Rhs element Vgr protein  TssI
20Thivi_22982508811..2510454 [+], 1644390950611FHA domain-containing protein  Fha
21Thivi_22992510451..2511002 [+], 552390950612type VI secretion lipoprotein  TssJ
22Thivi_23002511012..2512346 [+], 1335390950613type VI secretion protein  TssK
23Thivi_23012512350..2513735 [+], 1386390950614DotU family type IV / VI secretion system protein  TssL
24Thivi_23022513732..2517283 [+], 3552390950615type VI secretion protein IcmF  TssM
25Thivi_23032517280..2518083 [+], 804390950616type VI secretion-associated protein 
26Thivi_23042518080..2518817 [+], 738390950617serine/threonine protein phosphatase 
27Thivi_23052518841..2520031 [-], 1191390950618major facilitator superfamily transporter 
28Thivi_23062520028..2520870 [-], 843390950619transglutaminase 
29Thivi_23072520929..2521960 [-], 1032390950620thiamine monophosphate synthase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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