SecReT6
I. Summary
SecReT6 ID671 insolico
StrainPseudomonas stutzeri CCUG 29243
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_018028
Location127648..143601
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100111111
ComponentTssGTssJTssKTssM
Number1000
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A458_00635123900..125240 [-], 1341392419214lipase, class 3 
2A458_00640125684..125872 [-], 189392419215hypothetical protein 
3A458_00645126776..127651 [-], 876392419216hypothetical protein 
4A458_00650127648..129726 [-], 2079392419217Rhs element Vgr protein  TssI
5A458_00655129742..131250 [-], 1509392419218Fis family transcriptional regulator  Sfa2
6A458_00660131261..133852 [-], 2592392419219ATPase  TssH
7A458_00665133864..134871 [-], 1008392419220hypothetical protein  TssG
8A458_00670134835..136625 [-], 1791392419221hypothetical protein  TssF
9A458_00675136683..137045 [-], 363392419222hypothetical protein 
10A458_00680137032..137670 [-], 639392419223hypothetical protein 
11A458_00685137667..139586 [-], 1920392419224Rhs element Vgr protein  PAAR
12A458_00690139598..140005 [-], 408392419225GPW/gp25 family protein  TssE
13A458_00695140010..141488 [-], 1479392419226hypothetical protein  TssC
14A458_00700141515..142021 [-], 507392419227hypothetical protein  TssB
15A458_00705142039..143601 [-], 1563392419228ImpA domain-containing protein  TssA
16A458_00710143959..144861 [-], 903392419229aldose 1-epimerase 
17A458_00715145042..145731 [-], 690392419230amino acid ABC transporter permease 
18A458_00720145728..146423 [-], 696392419231amino acid ABC transporter permease 
19A458_00725146487..147242 [-], 756392419232periplasmic binding protein 
20A458_00730147257..148030 [-], 774392419233ABC transporter ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A